RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CEP41Q9BYV8 373 aa13.95□□□□□ -0.18
VPS33A-208ENST00000543633 TASP1Q9H6P5 420 aa13.95□□□□□ -0.18
VPS33A-208ENST00000543633 TIMMDC1Q9NPL8 285 aa13.95□□□□□ -0.18
VPS33A-208ENST00000543633 C20orf96Q9NUD7 363 aaPredicted RBP13.95□□□□□ -0.18
VPS33A-208ENST00000543633 SNTG2Q9NY99 539 aa13.95□□□□□ -0.18
VPS33A-208ENST00000543633 RRN3Q9NYV6 651 aa13.95□□□□□ -0.18
VPS33A-208ENST00000543633 UBAP1Q9NZ09 502 aa13.95□□□□□ -0.18
VPS33A-208ENST00000543633 RBM47A0AV96 593 aaKnown RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 CXCL11O14625 94 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 ACOT8O14734 319 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 PGM3O95394 542 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 ETS2P15036 469 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 WARSP23381 471 aaKnown RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 ADRA1BP35368 520 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 NR1H2P55055 460 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 CDH17Q12864 832 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 KIZQ2M2Z5 673 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 SV2CQ496J9 727 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 ARL13AQ5H913 290 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 LDLRAD1Q5T700 205 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 NOTUMQ6P988 496 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 ERO1BQ86YB8 467 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 EFCAB3Q8N7B9 438 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 APPL2Q8NEU8 664 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 BHLHE22Q8NFJ8 381 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 PGAP3Q96FM1 320 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 DUS3LQ96G46 650 aaKnown RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 MPP4Q96JB8 637 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 MAML3Q96JK9 1138 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 FAR2Q96K12 515 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 PPP1R16BQ96T49 567 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 MLPHQ9BV36 600 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 UBE2OQ9C0C9 1292 aaKnown RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 WDR55Q9H6Y2 383 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 ELP3Q9H9T3 547 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 VTA1Q9NP79 307 aa13.94□□□□□ -0.18
VPS33A-208ENST00000543633 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-208ENST00000543633 M0QYT0 321 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 SBK3P0C264 359 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 ERCC2P18074 760 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 GMPRP36959 345 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 DNAJB13P59910 316 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TPI1P60174 286 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 MYBPC1Q00872 1141 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PRPSAP1Q14558 356 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 GRM3Q14832 879 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 DLG2Q15700 870 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 NADK2Q4G0N4 442 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PPM1LQ5SGD2 360 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 LRRC8EQ6NSJ5 796 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 RBM44Q6ZP01 1051 aaKnown RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 ARMCX2Q7L311 632 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PIWIL4Q7Z3Z4 852 aaKnown RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TMEM102Q8N9M5 508 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 B3GALNT2Q8NCR0 500 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 ASB9Q96DX5 294 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 ATXN7L3BQ96GX2 97 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 CAB39LQ9H9S4 337 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 IARS2Q9NSE4 1012 aaKnown RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 CLIC5Q9NZA1 410 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 COL4A4P53420 1690 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 A0A1B0GVG6 124 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TK2O00142 265 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 KCNK1O00180 336 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 ZBTB24O43167 697 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 NPR3P17342 541 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 EPHA3P29320 983 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 AXLP30530 894 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 HOXA11P31270 313 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 CD68P34810 354 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TAF6P49848 677 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TRAP1Q12931 704 aaKnown RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PSMD5Q16401 504 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 KLHDC10Q6PID8 442 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 LILRA2Q8N149 483 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 AFAP1L2Q8N4X5 818 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TOP6BLQ8N6T0 577 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TRPC4APQ8TEL6 797 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PTCD2Q8WV60 388 aaKnown RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 C18orf25Q96B23 403 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 MFSD3Q96ES6 412 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 OTUD5Q96G74 571 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 TSGA13Q96PP4 275 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PPP1R2P1Q96PQ5 205 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 LPIN3Q9BQK8 851 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 HAUS8Q9BT25 410 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 COPS7BQ9H9Q2 264 aaPredicted RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 PDGFCQ9NRA1 345 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 SARDHQ9UL12 918 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 SLC39A10Q9ULF5 831 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 KCNH4Q9UQ05 1017 aa13.93□□□□□ -0.18
VPS33A-208ENST00000543633 GNEQ9Y223 722 aaKnown RBP13.93□□□□□ -0.18
VPS33A-208ENST00000543633 E2F8A0AVK6 867 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 NEMP1O14524 444 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 CACNG3O60359 315 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 OR6B1O95007 311 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 VAPBO95292 243 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 PDGFRBP09619 1106 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 SLC35E2BP0CK96 405 aa13.92□□□□□ -0.18
VPS33A-208ENST00000543633 HOXD8P13378 290 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms