RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	GNA12	Q03113	381 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	CCDC15	Q0P6D6	951 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	SCAP	Q12770	1279 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	ARL13B	Q3SXY8	428 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	RAB6C	Q53S08	254 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	RETSAT	Q6NUM9	610 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	TFAP2D	Q7Z6R9	452 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	SPATS2	Q86XZ4	545 aa	Known RBP	13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	OXR1	Q8N573	874 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	TMEM145	Q8NBT3	493 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	C3orf20	Q8ND61	904 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	OR7D4	Q8NG98	312 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	JOSD2	Q8TAC2	188 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	SLC30A5	Q8TAD4	765 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	VOPP1	Q96AW1	172 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	ISG20	Q96AZ6	181 aa	Known RBP	13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	RAB6C	Q9H0N0	254 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	GDF3	Q9NR23	364 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	TMEM248	Q9NWD8	314 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	KNTC1	P50748	2209 aa		13.4	□□□□□ -0.26
SEMA4D-223	ENST00000540475	PRAMEF26	H0Y7S4	382 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MAGEC1	O60732	1142 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MBD3	O95983	291 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	KRT3	P12035	628 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RHOQ	P17081	205 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RFC1	P35251	1148 aa	Predicted RBP	13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MAPKAPK2	P49137	400 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	UBXN1	Q04323	297 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SMAD1	Q15797	465 aa	Known RBP	13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	INAVA	Q3KP66	663 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SETMAR	Q53H47	684 aa	Predicted RBP	13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SLC45A4	Q5BKX6	768 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PPP1R15B	Q5SWA1	713 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CCDC183	Q5T5S1	534 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SFMBT2	Q5VUG0	894 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	C22orf39	Q6P5X5	142 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	DPY19L3	Q6ZPD9	716 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MON1B	Q7L1V2	547 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PCDH20	Q8N6Y1	951 aa	Known RBP	13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CHST14	Q8NCH0	376 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ANKRD20A12P	Q8NF67	263 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	NEK11	Q8NG66	645 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ARRDC3	Q96B67	414 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	BPIFA3	Q9BQP9	254 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	C11orf70	Q9BRQ4	267 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SYT11	Q9BT88	431 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	AASDHPPT	Q9NRN7	309 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	NDFIP2	Q9NV92	336 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ADAM22	Q9P0K1	906 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	IL36A	Q9UHA7	158 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PCDHGA1	Q9Y5H4	931 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	WASF2	Q9Y6W5	498 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PKD1L2	Q7Z442	2459 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MYLK	Q15746	1914 aa		13.39	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ITPR1	Q14643	2758 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TDRD6	O60522	2096 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GOLGA4	Q13439	2230 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SRRM3	A6NNA2	597 aa	Predicted RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM72C	H0Y354	149 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GOLGA6L22	H0YM25	854 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TAF4	O00268	1085 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CALB1	P05937	261 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	EPHA8	P29322	1005 aa	Predicted RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ETFB	P38117	255 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	NSF	P46459	744 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	C1QBP	Q07021	282 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ZNF284	Q2VY69	593 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ARSI	Q5FYB1	569 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM72A	Q5TYM5	149 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM72D	Q6L9T8	149 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	WDR59	Q6PJI9	974 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LINGO4	Q6UY18	593 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ERN2	Q76MJ5	926 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	IRF2BP2	Q7Z5L9	587 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM72B	Q86X60	149 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TSC1	Q92574	1164 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ARHGEF2	Q92974	986 aa	Known RBP	13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LRIG1	Q96JA1	1093 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	AGPAT1	Q99943	283 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MAGEB5	Q9BZ81	275 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MAGEH1	Q9H213	219 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ATP13A1	Q9HD20	1204 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	DKK4	Q9UBT3	224 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MYO6	Q9UM54	1294 aa		13.38	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM170A	A1A519	330 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CBX4	O00257	560 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	KPNA3	O00505	521 aa	Predicted RBP	13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	AP1G1	O43747	822 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LEFTY1	O75610	366 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LRIG2	O94898	1065 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GJB6	O95452	261 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PLEK	P08567	350 aa	Predicted RBP	13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	C1S	P09871	688 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CDK4	P11802	303 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GPD1	P21695	349 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ITGB7	P26010	798 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	L1CAM	P32004	1257 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms