RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 RABIFP47224 123 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 RPIAP49247 311 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 INHBCP55103 352 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 RPS21P63220 83 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 KRT83P78385 493 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 DEFB133Q30KQ1 61 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 PERM1Q5SV97 790 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 C6orf132Q5T0Z8 1188 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 CRTC1Q6UUV9 634 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 KYAT3Q6YP21 454 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 ZNF574Q6ZN55 896 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 PARGQ86W56 976 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 ATP11CQ8NB49 1132 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 STK32AQ8WU08 396 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 GLMNQ92990 594 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC35C1Q96A29 364 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SGF29Q96ES7 293 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 FEM1CQ96JP0 617 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 RPRD1AQ96P16 312 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 NT5C1BQ96P26 610 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 MED15Q96RN5 788 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 IL12RB2Q99665 862 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SRRTQ9BXP5 876 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC4A5Q9BY07 1137 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 THAP9Q9H5L6 903 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 KLF15Q9UIH9 416 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 TBC1D30Q9Y2I9 924 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 KIF26BQ2KJY2 2108 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 RNF103O00237 685 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 MUSKO15146 869 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 NOBOXO60393 691 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 CLDN11O75508 207 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 NTRK1P04629 796 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 JUNDP17535 347 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 CCR1P32246 355 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 NDUFA8P51970 172 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 PITX1P78337 314 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 FKBP3Q00688 224 aaKnown RBP11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 CENPCQ03188 943 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 MTA1Q13330 715 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 MAPK8IP2Q13387 824 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 AUHQ13825 339 aaKnown RBP11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 FGL2Q14314 439 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 ARSIQ5FYB1 569 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 KIAA1161Q6NSJ0 714 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 TMEM110Q86TL2 294 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 SMYD4Q8IYR2 804 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 PPM1KQ8N3J5 372 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 CHST14Q8NCH0 376 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 LMX1AQ8TE12 382 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 BTN2A2Q8WVV5 523 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 KAT5Q92993 513 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 PPP1R16AQ96I34 528 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 SEMA3CQ99985 751 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 BOCQ9BWV1 1114 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 MUC3BQ9H195 1237 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 WDR70Q9NW82 654 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 ARMCX3Q9UH62 379 aaPredicted RBP11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 IL36AQ9UHA7 158 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 PCDHGA7Q9Y5G6 932 aa11.89□□□□□ -0.51
CLSTN3-209ENST00000539982 RP1P56715 2156 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 TRPM6Q9BX84 2022 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 FAM237AA0A1B0GTK4 181 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 K7ERQ8 282 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 FPGTO14772 594 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 PMM2O15305 246 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 RAD51BO15315 384 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 SMAD6O43541 496 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 AFPP02771 609 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 SLC5A2P31639 672 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 FMO5P49326 533 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 IRAK1P51617 712 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 CLCN6P51797 869 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 PDX1P52945 283 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 CDH4P55283 916 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 CDK17Q00537 523 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 NFKB2Q00653 900 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 SGCGQ13326 291 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 PDE1CQ14123 709 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 SPIDRQ14159 915 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 DRAP1Q14919 205 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 C5orf22Q49AR2 442 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 ANKRD40Q6AI12 368 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 DENND1BQ6P3S1 775 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 KRBA2Q6ZNG9 492 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 C14orf80Q86SX3 495 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 EXTL1Q92935 676 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 NAT6Q93015 286 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 LIN37Q96GY3 246 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 LENG8Q96PV6 779 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 PSMB7Q99436 277 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 KLF6Q99612 283 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 CCDC3Q9BQI4 270 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 C2orf49Q9BVC5 232 aaPredicted RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 FAM204AQ9H8W3 233 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 METTL14Q9HCE5 456 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 SPASTQ9UBP0 616 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 ACSL6Q9UKU0 697 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 VANGL2Q9ULK5 521 aa11.88□□□□□ -0.51
CLSTN3-209ENST00000539982 FLNCQ14315 2725 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms