RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CCNDBP1O95273 360 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 IFNA16P05015 189 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 LYNP07948 512 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 CLEC2LP0C7M8 214 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 FAM228BP0C875 321 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 SLC2A3P11169 496 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 CD40P25942 277 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 HTR7P34969 479 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 IL13P35225 146 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 HOXD13P35453 343 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ADD2P35612 726 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 GP5P40197 560 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 RPL5P46777 297 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 RXRGP48443 463 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 VPS41P49754 854 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 TUBP50607 506 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 HNRNPMP52272 730 aaKnown RBP eCLIP5.63□□□□□ -1.51
CD44-236ENST00000533222 TFAP4Q01664 338 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 SPAG1Q07617 926 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ERV3-1Q14264 604 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 LRRC32Q14392 662 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 LPIN1Q14693 890 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PDCD1Q15116 288 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 TMEM266Q2M3C6 531 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 WSCD2Q2TBF2 565 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 USP41Q3LFD5 358 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 TBRG1Q3YBR2 411 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 XKR9Q5GH70 373 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 TEX30Q5JUR7 227 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 TTC38Q5R3I4 469 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PDPK2PQ6A1A2 396 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 SLFN12LQ6IEE8 588 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ARMCX5Q6P1M9 558 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 CNSTQ6PJW8 725 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MFSD6Q6ZSS7 791 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 UTS2BQ765I0 119 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MIER3Q7Z3K6 550 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ADGRG6Q86SQ4 1221 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PNMA8AQ86V59 439 aaPredicted RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 CDR2LQ86X02 465 aaPredicted RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 CARFQ8N187 725 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MMGT1Q8N4V1 131 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 C7orf31Q8N865 590 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ZNF610Q8N9Z0 462 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ZNF540Q8NDQ6 660 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 SIMC1Q8NDZ2 872 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PIGOQ8TEQ8 1089 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ATXN2LQ8WWM7 1075 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 LRRC59Q96AG4 307 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 CCDC51Q96ER9 411 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PBKQ96KB5 322 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PHACTR3Q96KR7 559 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 RMDN3Q96TC7 470 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 SEC62Q99442 399 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 HERPUD2Q9BSE4 406 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 CINPQ9BW66 212 aaPredicted RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 PACSIN1Q9BY11 444 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MTMR12Q9C0I1 747 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 POLR1EQ9GZS1 481 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 ANKRD2Q9GZV1 360 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 OR10A5Q9H207 317 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PRDM12Q9H4Q4 367 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 XKR8Q9H6D3 395 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MARCH7Q9H992 704 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 PPCSQ9HAB8 311 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 RAVER2Q9HCJ3 691 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 TUFT1Q9NNX1 390 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MRGBPQ9NV56 204 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 HYPKQ9NX55 129 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 NTMQ9P121 344 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 RSL24D1Q9UHA3 163 aaKnown RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 NARFQ9UHQ1 456 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MAGEL2Q9UJ55 1249 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ERGIC3Q9Y282 383 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MAD1L1Q9Y6D9 718 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 RTL9Q8NET4 1388 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 ABCC5O15440 1437 aa5.63□□□□□ -1.51
CD44-236ENST00000533222 MAGI1Q96QZ7 1491 aaPredicted RBP5.63□□□□□ -1.51
CD44-236ENST00000533222 SUPT6HQ7KZ85 1726 aaKnown RBP5.62□□□□□ -1.51
CD44-236ENST00000533222 LOC390937A0A1W2PQ73 354 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 A6NCN8 305 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 SMCO2A6NFE2 343 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 ZSCAN5BA6NJL1 495 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 PRSS44E7EML9 344 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 H3BNX3 289 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 hCG_1984214I3L0E3 225 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 RTCAO00442 366 aaKnown RBP5.62□□□□□ -1.51
CD44-236ENST00000533222 KCNN4O15554 427 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 AQP9O43315 295 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 CDK14O94921 469 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 WDPCPO95876 746 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 IL6P05231 212 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 HOXB8P17481 243 aaPredicted RBP5.62□□□□□ -1.51
CD44-236ENST00000533222 PDCP20941 246 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 RPS6KB1P23443 525 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 CHMP24386 653 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 PBLDP30039 288 aaPredicted RBP5.62□□□□□ -1.51
CD44-236ENST00000533222 HNF4AP41235 474 aa5.62□□□□□ -1.51
CD44-236ENST00000533222 GARSP41250 739 aaKnown RBP5.62□□□□□ -1.51
CD44-236ENST00000533222 PRCPP42785 496 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms