RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 SAE1Q9UBE0 346 aaPredicted RBP11.45□□□□□ -0.58
TRAPPC4-211ENST00000533012 FBXO4Q9UKT5 387 aa11.45□□□□□ -0.58
TRAPPC4-211ENST00000533012 FCF1Q9Y324 198 aaKnown RBP11.45□□□□□ -0.58
TRAPPC4-211ENST00000533012 TCRBV21S2A2A0A5A6 115 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 APOC4-APOC2K7ER74 178 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 MATN3O15232 486 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 BNIP3LO60238 219 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 RNASEH1O60930 286 aaKnown RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 SIN3BO75182 1162 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 TMCC1O94876 653 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 APOC2P02655 101 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 COL9A1P20849 921 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 RENBPP51606 427 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 SNRPD1P62314 119 aaKnown RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 CSTF1Q05048 431 aaKnown RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 ZNF33AQ06730 810 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 HNRNPDQ14103 355 aaKnown RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 LBRQ14739 615 aaKnown RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 CYTH1Q15438 398 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 CARD16Q5EG05 197 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 C9orf64Q5T6V5 341 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 MARC1Q5VT66 337 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 KIAA1211LQ6NV74 962 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 Q6ZVU0 165 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 PLPP6Q8IY26 295 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 CCDC13Q8IYE1 715 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 PGBD3Q8N328 593 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 BBS5Q8N3I7 341 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 C17orf53Q8N3J3 647 aaPredicted RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 RYBPQ8N488 228 aaPredicted RBP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 TTC13Q8NBP0 860 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 OR2T3Q8NH03 318 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 HDAC11Q96DB2 347 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 ERLEC1Q96DZ1 483 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 PBKQ96KB5 322 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 HHIPQ96QV1 700 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 PRRX2Q99811 253 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 MTG2Q9H4K7 406 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 FBRSQ9HAH7 460 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 PDFQ9HBH1 243 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 BCCIPQ9P287 314 aaKnown RBP eCLIP11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 SEPT3Q9UH03 358 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 ACTL7AQ9Y615 435 aa11.44□□□□□ -0.58
TRAPPC4-211ENST00000533012 K7ESF4 209 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 MCF2LO15068 1137 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 GALR2O43603 387 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 CEP104O60308 925 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 NEBLO76041 1014 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 ATP1A1P05023 1023 aaKnown RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 CCNB1P14635 433 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 VAV1P15498 845 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 PECAM1P16284 738 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 HOXA6P31267 233 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 CXCR5P32302 372 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 NRLP54845 237 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 RHOAP61586 193 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 PPIDQ08752 370 aaKnown RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 NSUN2Q08J23 767 aaKnown RBP eCLIP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 SLC10A7Q0GE19 358 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 AP1B1Q10567 949 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 XRCC4Q13426 336 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 ELAVL3Q14576 367 aaKnown RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 ANO7Q6IWH7 933 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 C22orf39Q6P5X5 142 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 TSSK4Q6SA08 328 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 DSG4Q86SJ6 1040 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 ZC3H18Q86VM9 953 aaKnown RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 SLC13A5Q86YT5 568 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 TMPRSS6Q8IU80 811 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 STK40Q8N2I9 435 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 OR2A12Q8NGT7 310 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 TFB1MQ8WVM0 346 aaKnown RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 OR8D1Q8WZ84 308 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 PRCCQ92733 491 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 FATE1Q969F0 183 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 HAUS1Q96CS2 278 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 OLFM3Q96PB7 478 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 LGMNQ99538 433 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 FERMT1Q9BQL6 677 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 CINPQ9BW66 212 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 TNKS2Q9H2K2 1166 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 PRMT8Q9NR22 394 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 HAUS2Q9NVX0 235 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 HECAQ9UBI9 543 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 EBF1Q9UH73 591 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 KIAA1549LQ6ZVL6 1849 aa11.43□□□□□ -0.58
TRAPPC4-211ENST00000533012 CTAGE9A4FU28 777 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 HACD1B0YJ81 288 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 H7C0C1 242 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 ZNF821O75541 412 aaPredicted RBP11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 POP4O95707 220 aaKnown RBP11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 IGSF6O95976 241 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 PEX11BO96011 259 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 GSRP00390 522 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 ACADMP11310 421 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 GABRG2P18507 467 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 CHRNA3P32297 505 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 HSPA9P38646 679 aaKnown RBP11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 ATP5OP48047 213 aa11.42□□□□□ -0.58
TRAPPC4-211ENST00000533012 COPAP53621 1224 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms