RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DPP6P42658 865 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 CTSKP43235 329 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 NOVA1P51513 510 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 CCR5P51681 352 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ZBED6P86452 979 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ASTE1Q2TB18 679 aaPredicted RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 HLA-BQ31612 363 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ARSIQ5FYB1 569 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 PRAMEF14Q5SWL7 426 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ACBD5Q5T8D3 534 aaPredicted RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 RWDD4Q6NW29 188 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 SCYL2Q6P3W7 929 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 DBX2Q6ZNG2 339 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 RTL3Q8N8U3 475 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 ATP11CQ8NB49 1132 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 OR2T34Q8NGX1 318 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 OR14C36Q8NHC7 312 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 CPLX3Q8WVH0 158 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 OR8D1Q8WZ84 308 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 SNX19Q92543 992 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 TBC1D31Q96DN5 1066 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 HMCESQ96FZ2 354 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 BTBD6Q96KE9 485 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 KCTD15Q96SI1 283 aaPredicted RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 SNRNP25Q9BV90 132 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 C2orf49Q9BVC5 232 aaPredicted RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 LRRC19Q9H756 370 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ATP13A1Q9HD20 1204 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 TMEM51Q9NW97 253 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 CNOT8Q9UFF9 292 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 ZFR2Q9UPR6 939 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 CA5BQ9Y2D0 317 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 MFHAS1Q9Y4C4 1052 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 TDRD6O60522 2096 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 SPAARA0A1B0GVQ0 90 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 BNIP3LO60238 219 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 SH3BP5O60239 455 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 LEFTY1O75610 366 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 CCDC172P0C7W6 258 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 PSMA2P25787 234 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 HNRNPH3P31942 346 aaKnown RBP10.87□□□□□ -0.67
CD44-227ENST00000528086 CASP14P31944 242 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 NNMTP40261 264 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 MAPKAPK2P49137 400 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 CLCN6P51797 869 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 KRT83P78385 493 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 FGL2Q14314 439 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 AFMIDQ63HM1 303 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 DCUN1D2Q6PH85 259 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 ARHGAP12Q8IWW6 846 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 NPWQ8N729 165 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 TMIEQ8NEW7 156 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 OR6K2Q8NGY2 324 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 BAHD1Q8TBE0 780 aaPredicted RBP10.87□□□□□ -0.67
CD44-227ENST00000528086 FNIP1Q8TF40 1166 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 OMDQ99983 421 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 THAP2Q9H0W7 228 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 PDFQ9HBH1 243 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 PARVAQ9NVD7 372 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 SUSD2Q9UGT4 822 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 PCSK1NQ9UHG2 260 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 BTBD3Q9Y2F9 522 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 ANKRD6Q9Y2G4 727 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 EPG5Q9HCE0 2579 aa10.87□□□□□ -0.67
CD44-227ENST00000528086 KMT2BQ9UMN6 2715 aaPredicted RBP10.86□□□□□ -0.67
CD44-227ENST00000528086 USP24Q9UPU5 2620 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 RASA4BC9J798 803 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 H0Y8X5 98 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 INSIG1O15503 277 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 RASA4O43374 803 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 KDELR3O43731 214 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CREB3O43889 395 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 OPHN1O60890 802 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 RNASEH1O60930 286 aaKnown RBP10.86□□□□□ -0.67
CD44-227ENST00000528086 SERPING1P05155 500 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CYP1A2P05177 515 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CEACAM1P13688 526 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 GNSP15586 552 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 SPINK2P20155 84 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 EPHB2P29323 1055 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 GRIA4P48058 902 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CCNHP51946 323 aaPredicted RBP10.86□□□□□ -0.67
CD44-227ENST00000528086 SLC20A2Q08357 652 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CYTH1Q15438 398 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 NFKBIBQ15653 356 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ZNF284Q2VY69 593 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ARL13BQ3SXY8 428 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 EFHC2Q5JST6 749 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ATXN7L2Q5T6C5 722 aaPredicted RBP10.86□□□□□ -0.67
CD44-227ENST00000528086 LRSAM1Q6UWE0 723 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 KDM7AQ6ZMT4 941 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ARHGAP36Q6ZRI8 547 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 RABEPKQ7Z6M1 372 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 SPATS2Q86XZ4 545 aaKnown RBP10.86□□□□□ -0.67
CD44-227ENST00000528086 UMODL1-AS1Q8N2C9 162 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 GRIN3AQ8TCU5 1115 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 GANCQ8TET4 914 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ZNF653Q96CK0 615 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 PPP1R9BQ96SB3 815 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 TMEM121BQ9BXQ6 578 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms