RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 AGAP9Q5VTM2 703 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 LAYNQ6UX15 382 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 ARHGAP36Q6ZRI8 547 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 OR10T2Q8NGX3 314 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 IRGQQ8WZA9 623 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 ZIC5Q96T25 663 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 SEMA3CQ99985 751 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 ZBED2Q9BTP6 218 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 SENP6Q9GZR1 1112 aaPredicted RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 PACSIN3Q9UKS6 424 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TTC24A2A3L6 582 aaPredicted RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 H7C4K7 107 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 IRAK2O43187 625 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 PLIN3O60664 434 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 CDC25CP30307 473 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 SLC18A1P54219 525 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 MPP1Q00013 466 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 SLC25A3Q00325 362 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 PPIDQ08752 370 aaKnown RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 NAB1Q13506 487 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 GRM3Q14832 879 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 PAQR9Q6ZVX9 377 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 C16orf59Q7L2K0 433 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TMC7Q7Z402 723 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 LDB1Q86U70 411 aaPredicted RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 TMPRSS6Q8IU80 811 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 DENND6AQ8IWF6 608 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 EFCAB3Q8N7B9 438 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 CENPIQ92674 756 aaPredicted RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 OSBPL1AQ9BXW6 950 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TCF7L2Q9NQB0 619 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TMLHEQ9NVH6 421 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 FBXO5Q9UKT4 447 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TRIM17Q9Y577 477 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 HEATR9A2RTY3 570 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 H0Y626 953 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 HAS3O00219 553 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 PDE5AO76074 875 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 CXCR3P49682 368 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 PGGT1BP53609 377 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 OXCT1P55809 520 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 SLC18A2Q05940 514 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 ZNF460Q14592 562 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 PAFAH1B3Q15102 231 aaKnown RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 KIAA0319Q5VV43 1072 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 NPWQ8N729 165 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 FAM13CQ8NE31 585 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 DCLRE1BQ9H816 532 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TRPM5Q9NZQ8 1165 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 UXTQ9UBK9 157 aaPredicted RBP10.31□□□□□ -0.76
MCF2-209ENST00000520602 ANGPTL3Q9Y5C1 460 aa10.31□□□□□ -0.76
MCF2-209ENST00000520602 TMEM88BA6NKF7 163 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 NVLO15381 856 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 BIRC5O15392 142 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RFPL1O75677 317 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RHOBTB1O94844 696 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SERPINF2P08697 491 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RPL17P18621 184 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 PEX19P40855 299 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 ZRANB3Q5FWF4 1079 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 TNFAIP8L3Q5GJ75 292 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 ARCQ7LC44 396 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 LRRTM3Q86VH5 581 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 DEFB107AQ8IZN7 70 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RNF148Q8N7C7 305 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 DNAJC9Q8WXX5 260 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.3□□□□□ -0.76
MCF2-209ENST00000520602 MYCBPQ99417 103 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 EBF4Q9BQW3 602 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 COPG2Q9UBF2 871 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 HBS1LQ9Y450 684 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 MGEA5O60502 916 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SNX2O60749 519 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 PROCP04070 461 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RHOCP08134 193 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 OR1D2P34982 312 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 MCCD1P59942 119 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 ELAVL2Q12926 359 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 PRKD1Q15139 912 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 MRNIPQ6NTE8 343 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 PKN3Q6P5Z2 889 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RFWD3Q6PCD5 774 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 MARK2Q7KZI7 788 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 SPATA24Q86W54 205 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 ZMIZ2Q8NF64 920 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 CATSPER2Q96P56 530 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RBBP8Q99708 897 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 LRMDAQ9H2I8 198 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 ATP13A1Q9HD20 1204 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 NCKIPSDQ9NZQ3 722 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 XPR1Q9UBH6 696 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 DNAJB4Q9UDY4 337 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RAD54BQ9Y620 910 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SF3B1O75533 1304 aaKnown RBP eCLIP10.3□□□□□ -0.76
MCF2-209ENST00000520602 NCF1BA6NI72 391 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 NCF1CA8MVU1 366 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 MGRN1O60291 552 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 RTN3O95197 1032 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 MBL2P11226 248 aaPredicted RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 NCF1P14598 390 aaPredicted RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms