RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ECT2LQ008S8 904 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF177Q13360 481 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CAMK1Q14012 370 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 OCLNQ16625 522 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 Q3C1V9 767 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 IER5Q5VY09 327 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ANO7Q6IWH7 933 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 NKAPQ8N5F7 415 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CCDC107Q8WV48 283 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 SMAD5Q99717 465 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 SENP6Q9GZR1 1112 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ZFYVE28Q9HCC9 887 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 DDX43Q9NXZ2 648 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 GLS2Q9UI32 602 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CRYL1Q9Y2S2 319 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PLIN3O60664 434 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ITGA2BP08514 1039 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CYP11B1P15538 503 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 AVPR1AP37288 418 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PKNOX1P55347 436 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 NRG3P56975 720 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 IL2P60568 153 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CCNYL2Q5T2Q4 361 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PIK3R6Q5UE93 754 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 TTI2Q6NXR4 508 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 DCP1AQ9NPI6 582 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 H0YJX3 145 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PLOD2O00469 737 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PPEF2O14830 753 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CHADO15335 359 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 TM7SF2O76062 418 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PGRP06401 933 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 GPIP06744 558 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 RPL21P46778 160 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ARFIP1P53367 373 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ARF3P61204 181 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ARF1P84077 181 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 TAF13Q15543 124 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 GOLGA7BQ2TAP0 167 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 DEF8Q6ZN54 512 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CHST15Q7LFX5 561 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 TEX47Q8TBZ9 253 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC4A5Q9BY07 1137 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 LACRTQ9GZZ8 138 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 TMEM168Q9H0V1 697 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CD320Q9NPF0 282 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 MTMR10Q9NXD2 777 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 BTG4Q9NY30 223 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 PLB1Q6P1J6 1458 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L10C9JJH3 530 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 IDO1P14902 403 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 MSR1P21757 451 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 MAPKAPK3Q16644 382 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 FSCN1Q16658 493 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 RFTN2Q52LD8 501 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 GRHL2Q6ISB3 625 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 GJD3Q8N144 294 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 FSTL5Q8N475 847 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 STAG3L4Q8TBR4 150 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ATG4AQ8WYN0 398 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ITPKCQ96DU7 683 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 TUBA1CQ9BQE3 449 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 RAB23Q9ULC3 237 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 POLIQ9UNA4 740 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 KDM5AP29375 1690 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 EML1O00423 815 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 OGTO15294 1046 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ERN1O75460 977 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SERPINB7O75635 380 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 HIST1H2ABP04908 130 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ATXN8OSP0DMR3 200 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 FOSL1P15407 271 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 MCAMP43121 646 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 IL18Q14116 193 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ALG11Q2TAA5 492 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SNAP47Q5SQN1 464 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 GARNL3Q5VVW2 1013 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF621Q6ZSS3 439 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 HIST3H2AQ7L7L0 130 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 RIOX2Q8IUF8 465 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ADGRF4Q8IZF3 695 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 HIST1H2ACQ93077 130 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 MCCC1Q96RQ3 725 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 NLNQ9BYT8 704 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 HMGXB4Q9UGU5 601 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SNX6Q9UNH7 406 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC28A1O00337 649 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 RORAP35398 523 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 AUHQ13825 339 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SMTNL2Q2TAL5 461 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 HMBOX1Q6NT76 420 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF467Q7Z7K2 595 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 COLGALT1Q8NBJ5 622 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 AGPAT3Q9NRZ7 376 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 TMEM9Q9P0T7 183 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 PCYOX1Q9UHG3 505 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 DOLKQ9UPQ8 538 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 TDRKHQ9Y2W6 561 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SAMHD1Q9Y3Z3 626 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 DPPA5A6NC42 116 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms