RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	TBC1D3F	A6NER0	549 aa	Predicted RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3L	B9A6J9	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	C1QTNF3-AMACR	E9PGA6	284 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	ALOX15B	O15296	676 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	RAMP2	O60895	175 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	GJB3	O75712	270 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3H	P0C7X1	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	GZMA	P12544	262 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	CD59	P13987	128 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	MAT2A	P31153	395 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	CASP14	P31944	242 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	GK	P32189	559 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	AFF3	P51826	1226 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TAS2R38	P59533	333 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	ZBED6	P86452	979 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	KIF19	Q2TAC6	998 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	ARSI	Q5FYB1	569 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	FAM46C	Q5VWP2	391 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3G	Q6DHY5	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3C	Q6IPX1	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	RETSAT	Q6NUM9	610 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	PPP1R2P3	Q6NXS1	205 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	ZNF354C	Q86Y25	554 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3	Q8IZP1	549 aa	Predicted RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	SNRNP25	Q9BV90	132 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	ISCU	Q9H1K1	167 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TSPY26P	Q9H489	355 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	DHX35	Q9H5Z1	703 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	GAREM1	Q9H706	876 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	DNAAF2	Q9NVR5	837 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	AP4E1	Q9UPM8	1137 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	SNX11	Q9Y5W9	270 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843		A0A087X0T9	212 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	SPAAR	A0A1B0GVQ0	90 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843		A0A1W2PPC4	97 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	C10orf142	B7Z368	130 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	PLRG1	O43660	514 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	LEFTY1	O75610	366 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	WNT1	P04628	370 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	SERPING1	P05155	500 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	FAM228B	P0C875	321 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	TCF4	P15884	667 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	MIP	P30301	263 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	RECQL	P46063	649 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	CLCN6	P51797	869 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	CCNH	P51946	323 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	TPI1	P60174	286 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	FAM193A	P78312	1265 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	SFSWAP	Q12872	951 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	POLD3	Q15054	466 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	NFKBIB	Q15653	356 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	HLA-B	Q31612	363 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	PIP5KL1	Q5T9C9	394 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	ADAT2	Q7Z6V5	191 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	PIP4P1	Q86T03	277 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	RTL3	Q8N8U3	475 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	KLK6	Q92876	244 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	FAM131C	Q96AQ9	280 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	HMCES	Q96FZ2	354 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	BTBD6	Q96KE9	485 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	CCDC114	Q96M63	670 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	KCTD15	Q96SI1	283 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	EPAS1	Q99814	870 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	THAP2	Q9H0W7	228 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	MAGEH1	Q9H213	219 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	AASDHPPT	Q9NRN7	309 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	ARHGAP20	Q9P2F6	1191 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	IL36A	Q9UHA7	158 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	ANKRD6	Q9Y2G4	727 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	LUC7L2	Q9Y383	392 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	WASF2	Q9Y6W5	498 aa		13.55	□□□□□ -0.24
RNF4-215	ENST00000511843	CABIN1	Q9Y6J0	2220 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	SH3BP5	O60239	455 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	LRCH4	O75427	683 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	TOP3B	O95985	862 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	DES	P17661	470 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	CSRP1	P21291	193 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	ETFB	P38117	255 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	GRIA4	P48058	902 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	CCR5	P51681	352 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	IL9R	Q01113	521 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	CARD16	Q5EG05	197 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	PRAMEF14	Q5SWL7	426 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	RYBP	Q8N488	228 aa	Predicted RBP	13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	TMIE	Q8NEW7	156 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	SYN2	Q92777	582 aa	Predicted RBP	13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	ARHGEF26	Q96DR7	871 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	CELF6	Q96J87	481 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	SERAC1	Q96JX3	654 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	MYOC	Q99972	504 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	ZDHHC5	Q9C0B5	715 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	ZDHHC6	Q9H6R6	413 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	CA5B	Q9Y2D0	317 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	SCIN	Q9Y6U3	715 aa		13.54	□□□□□ -0.24
RNF4-215	ENST00000511843	RASA4B	C9J798	803 aa		13.53	□□□□□ -0.24
RNF4-215	ENST00000511843		H0Y8X5	98 aa		13.53	□□□□□ -0.24
RNF4-215	ENST00000511843	EEF2K	O00418	725 aa	Known RBP	13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms