RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TSGA13Q96PP4 275 aa30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 PEX11BO96011 259 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 DEKP35659 375 aaKnown RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 STARD3Q14849 445 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 INO80DQ53TQ3 878 aaPredicted RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 PAPD7Q5XG87 772 aaKnown RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 TIGD7Q6NT04 549 aaPredicted RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 B4GALNT4Q76KP1 1039 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 CASKIN2Q8WXE0 1202 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 ZNF599Q96NL3 588 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 CEP44Q9C0F1 390 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 R3HDM2Q9Y2K5 976 aaKnown RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 CACNA1IQ9P0X4 2223 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 PRR33A8MZF0 331 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 GPR37L1O60883 481 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 TCP1P17987 556 aaKnown RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 COL9A1P20849 921 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 AP1B1Q10567 949 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 KIAA1211LQ6NV74 962 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 METTL3Q86U44 580 aaKnown RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 CCDC13Q8IYE1 715 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 MS4A14Q96JA4 679 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 QKIQ96PU8 341 aaKnown RBP eCLIP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 TNKS2Q9H2K2 1166 aa30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 SPATA6Q9NWH7 488 aaPredicted RBP30.15■■■□□ 2.42
LIMCH1-211ENST00000509638 WDFY4Q6ZS81 3184 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 EDDM13A0A1B0GTR0 161 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 A0A1W2PQF6 199 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 MCF2LO15068 1137 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 SYNCRIPO60506 623 aaKnown RBP30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 CCNCP24863 283 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 PRKD1Q15139 912 aaPredicted RBP30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 CRY1Q16526 586 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 TMEM92Q6UXU6 159 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 RASGEF1CQ8N431 466 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 TTC13Q8NBP0 860 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 NSMCE1Q8WV22 266 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 TFB1MQ8WVM0 346 aaKnown RBP30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 TM6SF2Q9BZW4 377 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 BRD8Q9H0E9 1235 aa30.14■■■□□ 2.42
LIMCH1-211ENST00000509638 CES2O00748 559 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 SIN3BO75182 1162 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 ZNF821O75541 412 aaPredicted RBP30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 CASQ1P31415 396 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 SATB1Q01826 763 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 SLC10A7Q0GE19 358 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 RFTN1Q14699 578 aaPredicted RBP30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 LBRQ14739 615 aaKnown RBP30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 LONRF2Q1L5Z9 754 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 TMEM31Q5JXX7 168 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 PCDH20Q8N6Y1 951 aaKnown RBP30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 ZNF419Q96HQ0 510 aaPredicted RBP30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 CINPQ9BW66 212 aaPredicted RBP30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 C1QTNF1Q9BXJ1 281 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 SUN2Q9UH99 717 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 ZNF318Q5VUA4 2279 aa30.13■■■□□ 2.41
LIMCH1-211ENST00000509638 KCNK1O00180 336 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 ZNF185O15231 689 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 MATN3O15232 486 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 BNIP3LO60238 219 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 EIF3EP60228 445 aaKnown RBP30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 ZNF33AQ06730 810 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 ATG4AQ8WYN0 398 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 PTPRN2Q92932 1015 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 FATE1Q969F0 183 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 ISG20Q96AZ6 181 aaKnown RBP30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 CD248Q9HCU0 757 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 SAR1BQ9Y6B6 198 aa30.12■■■□□ 2.41
LIMCH1-211ENST00000509638 H7C0C1 242 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 PGRMC1O00264 195 aaKnown RBP30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 ATP5OP48047 213 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 CCR3P51677 355 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 RHOAP61586 193 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 XRCC4Q13426 336 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 CAMK2GQ13555 558 aaPredicted RBP30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 ZNF235Q14590 738 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 CYTH1Q15438 398 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 SLC45A4Q5BKX6 768 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 C9orf64Q5T6V5 341 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 MAML1Q92585 1016 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 EXOC2Q96KP1 924 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 HHIPQ96QV1 700 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 PRSS16Q9NQE7 514 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 SMARCAL1Q9NZC9 954 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 LHX3Q9UBR4 397 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 SEPT3Q9UH03 358 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 HACD1B0YJ81 288 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 DLL1O00548 723 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 MMP13P45452 471 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 DGKEP52429 567 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 SIX1Q15475 284 aaPredicted RBP30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 MARC1Q5VT66 337 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 SEPT10Q9P0V9 454 aa30.11■■■□□ 2.41
LIMCH1-211ENST00000509638 TCRBV21S2A2A0A5A6 115 aa30.1■■■□□ 2.41
LIMCH1-211ENST00000509638 TARSL2A2RTX5 802 aaKnown RBP30.1■■■□□ 2.41
LIMCH1-211ENST00000509638 RBP3P10745 1247 aa30.1■■■□□ 2.41
LIMCH1-211ENST00000509638 CCNB1P14635 433 aa30.1■■■□□ 2.41
LIMCH1-211ENST00000509638 PRLRP16471 622 aa30.1■■■□□ 2.41
LIMCH1-211ENST00000509638 AVPR2P30518 371 aa30.1■■■□□ 2.41
LIMCH1-211ENST00000509638 HNRNPDQ14103 355 aaKnown RBP30.1■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms