RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	PCDH20	Q8N6Y1	951 aa	Known RBP	13.79	□□□□□ -0.2
APTX-231	ENST00000494973	ATP11C	Q8NB49	1132 aa		13.79	□□□□□ -0.2
APTX-231	ENST00000494973	UBXN4	Q92575	508 aa		13.79	□□□□□ -0.2
APTX-231	ENST00000494973	TEKT5	Q96M29	485 aa		13.79	□□□□□ -0.2
APTX-231	ENST00000494973	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
APTX-231	ENST00000494973	ASIC3	Q9UHC3	531 aa		13.79	□□□□□ -0.2
APTX-231	ENST00000494973	INTS6	Q9UL03	887 aa	Known RBP	13.79	□□□□□ -0.2
APTX-231	ENST00000494973	STARD13	Q9Y3M8	1113 aa		13.79	□□□□□ -0.2
APTX-231	ENST00000494973	SHROOM3	Q8TF72	1996 aa		13.79	□□□□□ -0.2
APTX-231	ENST00000494973	TARSL2	A2RTX5	802 aa	Known RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ERI2	A8K979	691 aa	Known RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973		J3KR12	359 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	RIOK3	O14730	519 aa	Known RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	PSMD3	O43242	534 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	SNAP91	O60641	907 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ANXA9	O76027	345 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	TMCC1	O94876	653 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	IGSF6	O95976	241 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	PEX11B	O96011	259 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	JCHAIN	P01591	159 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	BMP1	P13497	986 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	MCM3	P25205	808 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	TNNT3	P45378	269 aa	Predicted RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	RECQL	P46063	649 aa	Predicted RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	SLC6A11	P48066	632 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	RHOA	P61586	193 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	SNRPD1	P62314	119 aa	Known RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	RAD51	Q06609	339 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	WASHC5	Q12768	1159 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	GRM3	Q14832	879 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	PARP6	Q2NL67	630 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ANKRD20A2	Q5SQ80	823 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	TEX35	Q5T0J7	233 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ANKRD20A1	Q5TYW2	823 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ANKRD20A3	Q5VUR7	823 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ASTL	Q6HA08	431 aa	Predicted RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ZNF852	Q6ZMS4	543 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ARHGAP36	Q6ZRI8	547 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	PID1	Q7Z2X4	250 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	TP53INP2	Q8IXH6	220 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	PLPP6	Q8IY26	295 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	PHTF2	Q8N3S3	785 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	SH2D3C	Q8N5H7	860 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	CCDC33	Q8N5R6	958 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	TTC8	Q8TAM2	541 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	GDAP1L1	Q96MZ0	367 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	MGME1	Q9BQP7	344 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	GBA3	Q9H227	469 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ARHGEF3	Q9NR81	526 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	HEBP1	Q9NRV9	189 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	VPS45	Q9NRW7	570 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	RSPH14	Q9UHP6	348 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	ERVW-1	Q9UQF0	538 aa		13.78	□□□□□ -0.2
APTX-231	ENST00000494973	AAR2	Q9Y312	384 aa	Known RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.78	□□□□□ -0.2
APTX-231	ENST00000494973	AP3B1	O00203	1094 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	TTI1	O43156	1089 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	RAD51C	O43502	376 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	ATP9B	O43861	1147 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	GSR	P00390	522 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	PTGIR	P43119	386 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	CSNK1D	P48730	415 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	AP1S1	P61966	158 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	CALCOCO2	Q13137	446 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	LRRC32	Q14392	662 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	SLC44A4	Q53GD3	710 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	TMEM196	Q5HYL7	178 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	MIA3	Q5JRA6	1907 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	TJAP1	Q5JTD0	557 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	ALG1L	Q6GMV1	187 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	C22orf39	Q6P5X5	142 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	TPRG1	Q6ZUI0	275 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	RNF135	Q8IUD6	432 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	GJD3	Q8N144	294 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	ZNF567	Q8N184	647 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	NOA1	Q8NC60	698 aa	Known RBP	13.77	□□□□□ -0.21
APTX-231	ENST00000494973	NETO2	Q8NC67	525 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	FAM3C	Q92520	227 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	FCRL5	Q96RD9	977 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	NELL2	Q99435	816 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	ERP44	Q9BS26	406 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	SLC25A51	Q9H1U9	297 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	FBXL21	Q9UKT6	434 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	ATP8A1	Q9Y2Q0	1164 aa		13.77	□□□□□ -0.21
APTX-231	ENST00000494973	MYO10	Q9HD67	2058 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	13.76	□□□□□ -0.21
APTX-231	ENST00000494973		A0A1W2PQ67	120 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973		E7EVH7	732 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	NARS	O43776	548 aa	Known RBP	13.76	□□□□□ -0.21
APTX-231	ENST00000494973	HEXIM1	O94992	359 aa	Known RBP	13.76	□□□□□ -0.21
APTX-231	ENST00000494973	SRC	P12931	536 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
APTX-231	ENST00000494973	GLDC	P23378	1020 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	ADCY8	P40145	1251 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	GALK1	P51570	392 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	DRG2	P55039	364 aa	Known RBP	13.76	□□□□□ -0.21
APTX-231	ENST00000494973	GEM	P55040	296 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	GDF10	P55107	478 aa		13.76	□□□□□ -0.21
APTX-231	ENST00000494973	MRPS21	P82921	87 aa	Known RBP	13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms