RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 C6orf183Q5T699 404 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RAP1GAP2Q684P5 730 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 POLNQ7Z5Q5 900 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZNF280BQ86YH2 543 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ULK2Q8IYT8 1036 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SPATA22Q8NHS9 363 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM169Q96HH4 297 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KCTD15Q96SI1 283 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GTSE1Q9NYZ3 720 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SEPT3Q9UH03 358 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SSX2IPQ9Y2D8 614 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SMAPO00193 183 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CBX4O00257 560 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FOXN2P32314 431 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GARSP41250 739 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TBCCQ15814 346 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PSMD5Q16401 504 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ITPRIPL1Q6GPH6 555 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PRSS55Q6UWB4 352 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OTOP3Q7RTS5 596 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PTAR1Q7Z6K3 402 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZCCHC9Q8N567 271 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GSTCDQ8NEC7 633 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AZIN2Q96A70 460 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 VPS50Q96JG6 964 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CYP2S1Q96SQ9 504 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FICDQ9BVA6 458 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 YIPF2Q9BWQ6 316 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DUSP16Q9BY84 665 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MUC3BQ9H195 1237 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RSL24D1Q9UHA3 163 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SHOC2Q9UQ13 582 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SSC5DA1L4H1 1573 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 BOLA2-SMG1P6H3BVE0 249 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PHGDHO43175 533 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 INHAP05111 366 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZNF865P0CJ78 1059 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RAP1GDS1P52306 607 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LSAMPQ13449 338 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TRMT10BQ6PF06 316 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OTOP2Q7RTS6 562 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AFAP1L2Q8N4X5 818 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HDAC11Q96DB2 347 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 P2RY11Q96G91 374 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SYT11Q9BT88 431 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM109Q9BVC6 243 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SLC17A7Q9P2U7 560 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DNAJB4Q9UDY4 337 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PRKAG2Q9UGJ0 569 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ACTL7BQ9Y614 415 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GOLGA8QA0A0J9YX86 632 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GOLGA8OA6NCC3 632 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GOLGA8NF8WBI6 632 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DGKIO75912 1065 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 METTL18O95568 372 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PROCP04070 461 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CKMP06732 381 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GNAZP19086 355 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CYP2C18P33260 490 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MATKP42679 507 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SLC25A3Q00325 362 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GALNTL6Q49A17 601 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CMC1Q7Z7K0 106 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LRRC52Q8N7C0 313 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ENDOVQ8N8Q3 282 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZNF398Q8TD17 642 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CD101Q93033 1021 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TASP1Q9H6P5 420 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PIGVQ9NUD9 493 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TAS2R1Q9NYW7 299 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AFF4Q9UHB7 1163 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ASB3Q9Y575 518 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TCRBV9S1A1TA0A576 114 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MGEA5O60502 916 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 VAPBO95292 243 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MT-CYBP00156 380 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ECHS1P30084 290 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NOS2P35228 1153 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 VSTM1Q6UX27 236 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HEATR4Q86WZ0 1026 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TNS4Q8IZW8 715 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OR6K2Q8NGY2 324 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DQX1Q8TE96 717 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RSPH1Q8WYR4 309 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CCDC90BQ9GZT6 254 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LHX5Q9H2C1 402 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CAB39LQ9H9S4 337 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FAM237BA0A1B0GVD1 139 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CAPN8A6NHC0 703 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SNRPAP09012 282 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HSPA8P11142 646 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NFKB1P19838 968 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MAGEA10P43363 369 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ACLYP53396 1101 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ARHGEF6Q15052 776 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CERCAMQ5T4B2 595 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CLEC20AQ6ZU45 233 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GPRIN1Q7Z2K8 1008 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 STRA8Q7Z7C7 330 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MPP5Q8N3R9 675 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 521.9 ms