RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MCIDASD6RGH6 385 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PROB1E7EW31 1015 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 INSIG1O15503 277 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SEPT4O43236 478 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 HNRNPRO43390 633 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 KAT7O95251 611 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PEPDP12955 493 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CYP3A7P24462 503 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 GSTM2P28161 218 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SERPINA4P29622 427 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SERPINF1P36955 418 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CYP2J2P51589 502 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CALD1Q05682 793 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PPATQ06203 517 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SRSF1Q07955 248 aaKnown RBP eCLIP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 BIRC2Q13490 618 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 ALKBH1Q13686 389 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 MORC3Q14149 939 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PTGR1Q14914 329 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PGM5Q15124 567 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 ARL13AQ5H913 290 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 HMBOX1Q6NT76 420 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SYNE3Q6ZMZ3 975 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 FAM43BQ6ZT52 329 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CTU1Q7Z7A3 348 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 FAM185AQ8N0U4 392 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 DPP10Q8N608 796 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 ENDOVQ8N8Q3 282 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 Q8N9P0 234 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 GOLGA1Q92805 767 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 KCNJ9Q92806 393 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 TRAPPC9Q96Q05 1148 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 WDR83Q9BRX9 315 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 MECRQ9BV79 373 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 TRIM31Q9BZY9 425 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 EBF3Q9H4W6 596 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 TAF1DQ9H5J8 278 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 MLXIPQ9HAP2 919 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PDE11AQ9HCR9 933 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SEPSECSQ9HD40 501 aaKnown RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 ARL15Q9NXU5 204 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CFDP1Q9UEE9 299 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-208ENST00000490788 COMMD10Q9Y6G5 202 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CCDC144AA2RUR9 1427 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 TNS3Q68CZ2 1445 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 ADAMTS13Q76LX8 1427 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 KIF7Q2M1P5 1343 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 PASKQ96RG2 1323 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 COL14A1Q05707 1796 aaKnown RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 A0A0C4DFX4 3053 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 ARHGEF10O15013 1369 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 A0A1W2PPC1 479 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM247A6NEH6 219 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 CXorf65A6NEN9 183 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 SAC3D1A6NKF1 404 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 FOXO6A8MYZ6 492 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 ACKR2O00590 384 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 TLX3O43711 291 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 HLA-DQA2P01906 255 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 HSP90AA1P07900 732 aaKnown RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 HOXB9P17482 250 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 IGFBP2P18065 325 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 KLRC2P26717 231 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 PDIA3P30101 505 aaKnown RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 MAP2K2P36507 400 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 ENTPD1P49961 510 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 RBM5P52756 815 aaKnown RBP eCLIP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 ADPRHP54922 357 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 FOXL2P58012 376 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 GOLGA8FQ08AF8 430 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 TIGD6Q17RP2 521 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 TRIM60Q495X7 471 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 RUNDC3AQ59EK9 446 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 PIK3CD-AS1Q5SR53 167 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 ANKRD45Q5TZF3 282 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 SULT6B1Q6IMI4 303 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 Q7L0L9 218 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 RRAGAQ7L523 313 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 PKD1L3Q7Z443 1732 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM200AQ86VY9 491 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 CCDC25Q86WR0 208 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 CAMK1DQ8IU85 385 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 SPICE1Q8N0Z3 855 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 PAQR4Q8N4S7 273 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 FSIP1Q8NA03 581 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 CLEC4CQ8WTT0 213 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM174Q8WUU8 243 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 CCT6BQ92526 530 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 EME1Q96AY2 570 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 VCPIP1Q96JH7 1222 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 LRRIQ1Q96JM4 1722 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 WACQ9BTA9 647 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 IFT27Q9BW83 186 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 SF3B5Q9BWJ5 86 aaKnown RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 GATA5Q9BWX5 397 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 RBM38Q9H0Z9 239 aaKnown RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 PABPC3Q9H361 631 aaKnown RBP2.38□□□□□ -2.03
HMGB1-208ENST00000490788 SAYSD1Q9NPB0 183 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 PRDM8Q9NQV8 689 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 HIF1ANQ9NWT6 349 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms