RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TRIM31Q9BZY9 425 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 PABPC3Q9H361 631 aaKnown RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 SEPSECSQ9HD40 501 aaKnown RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 HERC5Q9UII4 1024 aaKnown RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 DOCK7Q96N67 2140 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 A0A087WV62 115 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 IGHV4-28A0A0C4DH34 117 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 FAM90A20PA6NIJ5 464 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 C17orf100A8MU93 164 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 SYT5O00445 386 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 HNRNPRO43390 633 aaKnown RBP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 GRID2O43424 1007 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 GAS8-AS1O95177 125 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 MYL1P05976 194 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 CHN1P15882 459 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 PDIA3P30101 505 aaKnown RBP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 CLCNKBP51801 687 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 DLX5P56178 289 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 AP2B1P63010 937 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 TUBA1BP68363 451 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 POU5F1BQ06416 359 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 ILF3Q12906 894 aaKnown RBP eCLIP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 TBC1D9BQ66K14 1250 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 ATG9BQ674R7 924 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 XRRA1Q6P2D8 792 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 MON1BQ7L1V2 547 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 GALNT7Q86SF2 657 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 FJX1Q86VR8 437 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 TMPRSS12Q86WS5 348 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 PTGR2Q8N8N7 351 aaPredicted RBP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 KCNJ9Q92806 393 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 PIGSQ96S52 555 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 PKP4Q99569 1192 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 SLC25A33Q9BSK2 321 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 BRD8Q9H0E9 1235 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 ELAC1Q9H777 363 aaKnown RBP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 NLRC4Q9NPP4 1024 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 KLQ9UEF7 1012 aa3.29□□□□□ -1.88
CPSF3-205ENST00000489629 AGO1Q9UL18 857 aaKnown RBP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 SRPRBQ9Y5M8 271 aaKnown RBP3.29□□□□□ -1.88
CPSF3-205ENST00000489629 DENND3A2RUS2 1198 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 PRSS47A8MTI9 375 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ERVV-2B6SEH9 535 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 KCNJ13O60928 360 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 KRT36O76013 467 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 KRT18P05783 430 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 SNRNP70P08621 437 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ARSAP15289 507 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 SERPINF1P36955 418 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 MYBPC2Q14324 1141 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 HLFQ16534 295 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ZNF718Q3SXZ3 478 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ZNF672Q499Z4 452 aaPredicted RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 WBP2NLQ6ICG8 309 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 DGAT2L7PQ6IED9 249 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 LIN54Q6MZP7 749 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 AADACL2Q6P093 401 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 GGT6Q6P531 493 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 WDR5BQ86VZ2 330 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 RBFAQ8N0V3 343 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 MUC20Q8N307 709 aaPredicted RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 TCP11L2Q8N4U5 519 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ZNF527Q8NB42 609 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 CPT1BQ92523 772 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 DUX5Q96PT3 197 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 TEFMQ96QE5 360 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 GFM1Q96RP9 751 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ELAC2Q9BQ52 826 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 CADM1Q9BY67 442 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 WDR12Q9GZL7 423 aaKnown RBP3.28□□□□□ -1.88
CPSF3-205ENST00000489629 GAREM1Q9H706 876 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 ARFGAP3Q9NP61 516 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 OCIAD1Q9NX40 245 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 NDUFAF4Q9P032 175 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 UPB1Q9UBR1 384 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 SLC45A1Q9Y2W3 748 aa3.28□□□□□ -1.88
CPSF3-205ENST00000489629 LOC102724159A0A0B4J2E5 919 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 PLSCR5A0PG75 271 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 DDTLA6NHG4 134 aaPredicted RBP3.27□□□□□ -1.89
CPSF3-205ENST00000489629 ACP5P13686 325 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 SERPINB3P29508 390 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 SERPINA4P29622 427 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 POU3F1Q03052 451 aaPredicted RBP3.27□□□□□ -1.89
CPSF3-205ENST00000489629 CTTNQ14247 550 aaKnown RBP3.27□□□□□ -1.89
CPSF3-205ENST00000489629 PWP2Q15269 919 aaKnown RBP3.27□□□□□ -1.89
CPSF3-205ENST00000489629 RPS6KA2Q15349 733 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 ZRSR1Q15695 479 aaKnown RBP3.27□□□□□ -1.89
CPSF3-205ENST00000489629 LRRC24Q50LG9 513 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 TMEM268Q5VZI3 342 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 RINLQ6ZS11 566 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 PALB2Q86YC2 1186 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 RFLNBQ8N5W9 214 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 SCAIQ8N9R8 606 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 MIGA1Q8NAN2 632 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 STT3BQ8TCJ2 826 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 MSTO1Q9BUK6 570 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 DDX23Q9BUQ8 820 aaKnown RBP3.27□□□□□ -1.89
CPSF3-205ENST00000489629 IFT27Q9BW83 186 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 CLPBQ9H078 707 aa3.27□□□□□ -1.89
CPSF3-205ENST00000489629 TARSL2A2RTX5 802 aaKnown RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms