RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 ZNF585AQ6P3V2 769 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FBXO38Q6PIJ6 1188 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 KLHL24Q6TFL4 600 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 LRIG3Q6UXM1 1119 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TAOK1Q7L7X3 1001 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 USP37Q86T82 979 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TRIM74Q86UV6 250 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TRIM73Q86UV7 250 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TMEM200AQ86VY9 491 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TMPRSS6Q8IU80 811 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 CNTROBQ8N137 903 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 HDDC3Q8N4P3 179 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SLC4A11Q8NBS3 891 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SLC17A8Q8NDX2 589 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 CNNM3Q8NE01 707 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 OR56A1Q8NGH5 318 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 IQCDQ96DY2 449 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 DTNBP1Q96EV8 351 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 NRBF2Q96F24 287 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 LRRC46Q96FV0 321 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 MED15Q96RN5 788 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 PRRX2Q99811 253 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 ERP44Q9BS26 406 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 APOL6Q9BWW8 343 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 MOV10L1Q9BXT6 1211 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 IMPG2Q9BZV3 1241 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 ZNF518BQ9C0D4 1074 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TINAGL1Q9GZM7 467 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 SLC25A18Q9H1K4 315 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 VPS16Q9H269 839 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 MRPL44Q9H9J2 332 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 NOD2Q9HC29 1040 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SEPSECSQ9HD40 501 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 PRDM8Q9NQV8 689 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TM7SF3Q9NS93 570 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SACM1LQ9NTJ5 587 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SOHLH2Q9NX45 425 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 MALT1Q9UDY8 824 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 RGS17Q9UGC6 210 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 SRRDQ9UH36 339 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FBXO40Q9UH90 709 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 AFF4Q9UHB7 1163 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 IL19Q9UHD0 177 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 CORO1CQ9ULV4 474 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 NEU2Q9Y3R4 380 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 HS3ST4Q9Y661 456 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FPGT-TNNI3KV9GXZ4 949 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 IGSF1Q8N6C5 1336 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 A0A087WZ62 844 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 A0A1B0GTW7 788 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 GOLGA6L7A0A1B0GV03 622 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 GAGE12BA1L429 117 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 EME2A4GXA9 379 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 GAGE12HA6NDE8 117 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 LRRIQ4A6NIV6 560 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 TMCO5BA8MYB1 307 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PSMA7O14818 248 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 MATN3O15232 486 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 DIAPH2O60879 1101 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 DNAJB5O75953 348 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 SLITRK3O94933 977 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PRAMEF12O95522 483 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PTBP3O95758 552 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 PNPP00491 289 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PLGP00747 810 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 GRPP07492 148 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CNPP09543 421 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 PIM1P11309 404 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 UBL4AP11441 157 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 FCER1AP12319 257 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 TYMPP19971 482 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 EPHA8P29322 1005 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 EEF1DP29692 281 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 CCR1P32246 355 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 MAGEA4P43358 317 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PIP4K2AP48426 406 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 AARSP49588 968 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS41-212ENST00000482217 VPS41P49754 854 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 ATXN3P54252 364 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 HDAC4P56524 1084 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 EIF4A1P60842 406 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS41-212ENST00000482217 ZNF844Q08AG5 666 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 ELP6Q0PNE2 266 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RALGDSQ12967 914 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 SLC13A2Q13183 592 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CHIT1Q13231 466 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RIPK1Q13546 671 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 SNX1Q13596 522 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RAB32Q13637 225 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RCN2Q14257 317 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CDSNQ15517 529 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 MAPKAPK3Q16644 382 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 TYSND1Q2T9J0 566 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 C15orf59Q2T9L4 293 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 PRICKLE4Q2TBC4 344 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CFAP221Q4G0U5 840 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RABL3Q5HYI8 236 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 GLRA4Q5JXX5 417 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 C1orf185Q5T7R7 199 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms