RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RLN3Q8WXF3 142 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 DDX1Q92499 740 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 COX4I2Q96KJ9 171 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 Q96M66 194 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 GABRG3Q99928 467 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 CRACR2AQ9BSW2 395 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 TRIM62Q9BVG3 475 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC2A11Q9BYW1 496 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 THAP9Q9H5L6 903 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF552Q9H707 407 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 STOML2Q9UJZ1 356 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 CYP8B1Q9UNU6 501 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 ADAMTS9Q9P2N4 1935 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 TEX51A0A1B0GUA7 166 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 A0A1W2PQF6 199 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 MED19A0JLT2 244 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 IRAK2O43187 625 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 AP5Z1O43299 807 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 MSI1O43347 362 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 THAP12O43422 761 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 TIMM44O43615 452 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF217O75362 1048 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 FBXO24O75426 580 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 LETM1O95202 739 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 IGLV3-27P01718 113 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 NCAM1P13591 858 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC9A1P19634 815 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 HOXD9P28356 352 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ERCC5P28715 1186 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 GNA15P30679 374 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 USP8P40818 1118 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 DPP6P42658 865 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 WASP42768 502 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 GPD2P43304 727 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 RPL34P49207 117 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC11A2P49281 568 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 DHPSP49366 369 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ARID5AQ03989 594 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 STARD3Q14849 445 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 LRRC14Q15048 493 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 EIF4HQ15056 248 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 MAN2A1Q16706 1144 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 EXOC3L4Q17RC7 722 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 GEN1Q17RS7 908 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SPDYCQ5MJ68 293 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ADGRF1Q5T601 910 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 NUGGCQ68CJ6 796 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 IL31Q6EBC2 164 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 DENND1BQ6P3S1 775 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC36A4Q6YBV0 504 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF605Q86T29 641 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 CDH24Q86UP0 819 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 HID1Q8IV36 788 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 UNC45BQ8IWX7 931 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 IPO4Q8TEX9 1081 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 CLEC4CQ8WTT0 213 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF606Q8WXB4 792 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 GAL3ST3Q96A11 431 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 FAM149B1Q96BN6 582 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 P2RY11Q96G91 374 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 PIWIL1Q96J94 861 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SERPINB11Q96P15 392 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 MED15Q96RN5 788 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ACOX2Q99424 681 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 DDX50Q9BQ39 737 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SGPP1Q9BX95 441 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 CEP44Q9C0F1 390 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 MIS12Q9H081 205 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 NUP62CLQ9H1M0 184 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 SMOC1Q9H4F8 434 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 ST7Q9NRC1 585 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 CALCOCO1Q9P1Z2 691 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 THAP10Q9P2Z0 257 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 APEX2Q9UBZ4 518 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 KCTD3Q9Y597 815 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 STON1Q9Y6Q2 735 aa7.06□□□□□ -1.28
CCDC88A-213ENST00000476903 MUC22E2RYF6 1773 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 NYNRINQ9P2P1 1898 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TYW5A2RUC4 315 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 BECN2A8MW95 431 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CAPN9O14815 690 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 SYNCRIPO60506 623 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TSPAN3O60637 253 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 PON1P27169 355 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TBX4P57082 545 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 RPL6Q02878 288 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 ENPP2Q13822 863 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 SSPNQ14714 243 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 NR0B2Q15466 257 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 ARHGAP44Q17R89 818 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 DPCR1Q3MIW9 517 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 MPP7Q5T2T1 576 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 STPG1Q5TH74 334 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 LYSMD4Q5XG99 296 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 TCEAL6Q6IPX3 200 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 KIAA1211LQ6NV74 962 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 GJB7Q6PEY0 223 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 CLEC17AQ6ZS10 378 aa7.05□□□□□ -1.28
CCDC88A-213ENST00000476903 BEND5Q7L4P6 421 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms