RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 TRPC3Q13507 836 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 ADGRE1Q14246 886 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 SOWAHAQ2M3V2 549 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 EGFLAMQ63HQ2 1017 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 CYS1Q717R9 158 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 TICAM1Q8IUC6 712 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 SCUBE3Q8IX30 993 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 PLPP6Q8IY26 295 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 BHLHE22Q8NFJ8 381 aaPredicted RBP8.53□□□□□ -1.04
VAPB-205ENST00000476395 SLC7A14Q8TBB6 771 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 TRPM4Q8TD43 1214 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 CASP10Q92851 521 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 KCTD15Q96SI1 283 aaPredicted RBP8.53□□□□□ -1.04
VAPB-205ENST00000476395 SLC29A1Q99808 456 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 ZNF304Q9HCX3 659 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 TXNRD2Q9NNW7 524 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 DTLQ9NZJ0 730 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 SSX2IPQ9Y2D8 614 aa8.53□□□□□ -1.04
VAPB-205ENST00000476395 ABCB7O75027 752 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 MTRF1O75570 445 aaKnown RBP8.52□□□□□ -1.04
VAPB-205ENST00000476395 SEC24DO94855 1032 aaPredicted RBP8.52□□□□□ -1.04
VAPB-205ENST00000476395 SBK3P0C264 359 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 TPSB2P20231 275 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 POLR2BP30876 1174 aaKnown RBP8.52□□□□□ -1.04
VAPB-205ENST00000476395 RGS7P49802 495 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 IDH3AP50213 366 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 SF3B4Q15427 424 aaKnown RBP eCLIP8.52□□□□□ -1.043e-8■■■□□ 15.6
VAPB-205ENST00000476395 TPSAB1Q15661 275 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 DPYSL2Q16555 572 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 CARTPTQ16568 116 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 FAM47CQ5HY64 1035 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 NOL9Q5SY16 702 aaKnown RBP8.52□□□□□ -1.04
VAPB-205ENST00000476395 PLD6Q8N2A8 252 aaKnown RBP8.52□□□□□ -1.04
VAPB-205ENST00000476395 SEPT1Q8WYJ6 367 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 FCRL3Q96P31 734 aaPredicted RBP8.52□□□□□ -1.04
VAPB-205ENST00000476395 QKIQ96PU8 341 aaKnown RBP eCLIP8.52□□□□□ -1.04
VAPB-205ENST00000476395 NFKBIZQ9BYH8 718 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 ASNSD1Q9NWL6 643 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 POU2F3Q9UKI9 436 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 TIMM22Q9Y584 194 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 FADS3Q9Y5Q0 445 aa8.52□□□□□ -1.04
VAPB-205ENST00000476395 WDR27A2RRH5 827 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 MED7O43513 233 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PLIN3O60664 434 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 KRT19P08727 400 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 HSPA1AP0DMV8 641 aaKnown RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 HSPA1BP0DMV9 641 aaKnown RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 ZNF23P17027 643 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 NUDT2P50583 147 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 NKX2-5P52952 324 aaPredicted RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 CSE1LP55060 971 aaKnown RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 MLLT10P55197 1068 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PITX1P78337 314 aaPredicted RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 NME3Q13232 169 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 FAM187BQ17R55 369 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 FASTKD1Q53R41 847 aaKnown RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 ZNF667Q5HYK9 610 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 CELF3Q5SZQ8 465 aaKnown RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 STXBP5Q5T5C0 1151 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PDPK2PQ6A1A2 396 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 DCLRE1AQ6PJP8 1040 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ISL2Q96A47 359 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 SLC2A11Q9BYW1 496 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 DPEP3Q9H4B8 488 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 OLAHQ9NV23 265 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 TMED5Q9Y3A6 229 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 DNAJC25-GNG10A0A024R161 153 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ZNF487B1APH4 448 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 C19orf81C9J6K1 198 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 H7C0C1 242 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 MATN2O00339 956 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 TPP1O14773 563 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 CBFA2T3O75081 653 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PSMC3P17980 439 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 CDH3P22223 829 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 CYP2F1P24903 491 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 HOXD10P28358 340 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ATP5OP48047 213 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 XIAPP98170 497 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 MXD4Q14582 209 aaPredicted RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 BCL2A1Q16548 175 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ZNF423Q2M1K9 1284 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PLPPR4Q7Z2D5 763 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 RIOX2Q8IUF8 465 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 C10orf107Q8IVU9 208 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 CHST13Q8NET6 341 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PPP1R14CQ8TAE6 165 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 KBTBD7Q8WVZ9 684 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 NLRP7Q8WX94 980 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ATP6V1E2Q96A05 226 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ANKRD36BP1Q96IX9 119 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 MAML3Q96JK9 1138 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 NLRP4Q96MN2 994 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 LENG8Q96PV6 779 aaPredicted RBP8.52□□□□□ -1.05
VAPB-205ENST00000476395 CDRT15Q96T59 188 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 ZNF670Q9BS34 389 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 NDEL1Q9GZM8 345 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 COQ10BQ9H8M1 238 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 PDGFCQ9NRA1 345 aa8.52□□□□□ -1.05
VAPB-205ENST00000476395 TMEM216Q9P0N5 145 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms