RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 DPY19L3Q6ZPD9 716 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 DSG4Q86SJ6 1040 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 SPATS2Q86XZ4 545 aaKnown RBP14.42□□□□□ -0.1
UPF3A-204ENST00000475218 TBC1D3Q8IZP1 549 aaPredicted RBP14.42□□□□□ -0.1
UPF3A-204ENST00000475218 PYROXD2Q8N2H3 581 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 SETD7Q8WTS6 366 aaKnown RBP14.42□□□□□ -0.1
UPF3A-204ENST00000475218 ADAMTS14Q8WXS8 1223 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 SERAC1Q96JX3 654 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 SPON2Q9BUD6 331 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 KDM4CQ9H3R0 1056 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 NOL6Q9H6R4 1146 aaKnown RBP14.42□□□□□ -0.1
UPF3A-204ENST00000475218 WASF2Q9Y6W5 498 aa14.42□□□□□ -0.1
UPF3A-204ENST00000475218 SIGLEC16A6NMB1 481 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 CBX4O00257 560 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 FLRT2O43155 660 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 CCP110O43303 1012 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 ATXN1LP0C7T5 689 aaKnown RBP14.41□□□□□ -0.1
UPF3A-204ENST00000475218 CD38P28907 300 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 SERPINH1P50454 418 aaKnown RBP14.41□□□□□ -0.1
UPF3A-204ENST00000475218 CLCN6P51797 869 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 C1QBPQ07021 282 aaKnown RBP14.41□□□□□ -0.1
UPF3A-204ENST00000475218 FAM46CQ5VWP2 391 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 TRIM69Q86WT6 500 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 DNAAF5Q86Y56 855 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 KDF1Q8NAX2 398 aaPredicted RBP14.41□□□□□ -0.1
UPF3A-204ENST00000475218 ANKRD20A12PQ8NF67 263 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 NTAN1Q96AB6 310 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 NAP1L5Q96NT1 182 aaPredicted RBP14.41□□□□□ -0.1
UPF3A-204ENST00000475218 CAAP1Q9H8G2 361 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 ATP13A1Q9HD20 1204 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 TMEM248Q9NWD8 314 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 CA5BQ9Y2D0 317 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 MSRB2Q9Y3D2 182 aa14.41□□□□□ -0.1
UPF3A-204ENST00000475218 C1QTNF3-AMACRE9PGA6 284 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 PLEKP08567 350 aaPredicted RBP14.4□□□□□ -0.1
UPF3A-204ENST00000475218 RHOQP17081 205 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 GPD1P21695 349 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 CCT8P50990 548 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 NXPH1P58417 271 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 SCAPQ12770 1279 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 NAPEPLDQ6IQ20 393 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 ADAT2Q7Z6V5 191 aaKnown RBP14.4□□□□□ -0.1
UPF3A-204ENST00000475218 TMIEQ8NEW7 156 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 ARHGEF2Q92974 986 aaKnown RBP14.4□□□□□ -0.1
UPF3A-204ENST00000475218 ELF4Q99607 663 aaPredicted RBP14.4□□□□□ -0.1
UPF3A-204ENST00000475218 AASDHPPTQ9NRN7 309 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 FCF1Q9Y324 198 aaKnown RBP14.4□□□□□ -0.1
UPF3A-204ENST00000475218 COL5A1P20908 1838 aaPredicted RBP14.4□□□□□ -0.1
UPF3A-204ENST00000475218 ITPR1Q14643 2758 aa14.4□□□□□ -0.1
UPF3A-204ENST00000475218 LEFTY1O75610 366 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 TRIM16O95361 564 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 CALB1P05937 261 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ZNF143P52747 638 aaPredicted RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 IQCB1Q15051 598 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ZNF284Q2VY69 593 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ARSIQ5FYB1 569 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ACAD10Q6JQN1 1059 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 CAVIN1Q6NZI2 390 aaKnown RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 LRSAM1Q6UWE0 723 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 KANSL1Q7Z3B3 1105 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 GATAD2AQ86YP4 633 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 MCOLN2Q8IZK6 566 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 GRIN3AQ8TCU5 1115 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 RHBDD1Q8TEB9 315 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 SELENOOQ9BVL4 669 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 TTYH3Q9C0H2 523 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 DNAI1Q9UI46 699 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ZFR2Q9UPR6 939 aaKnown RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 PCDHB9Q9Y5E1 797 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 TLR4O00206 839 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 KPNA3O00505 521 aaPredicted RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 FERP16591 822 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 C21orf59P57076 290 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 RWDD4Q6NW29 188 aaKnown RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ARFGAP1Q8N6T3 406 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 TMEM145Q8NBT3 493 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 SAP25Q8TEE9 199 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 MCEEQ96PE7 176 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 CEP44Q9C0F1 390 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 KLC2Q9H0B6 622 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 PREBQ9HCU5 417 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 SEPT11Q9NVA2 429 aaKnown RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 IL36AQ9UHA7 158 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ZMIZ1Q9ULJ6 1067 aa14.39□□□□□ -0.11
UPF3A-204ENST00000475218 ARID1BQ8NFD5 2236 aaPredicted RBP14.39□□□□□ -0.11
UPF3A-204ENST00000475218 LRRC53A6NM62 1247 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 RNGTTO60942 597 aaKnown RBP14.38□□□□□ -0.11
UPF3A-204ENST00000475218 PRLRP16471 622 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 GKP32189 559 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 GRK6P43250 576 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 MAPKAPK2P49137 400 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 CCNHP51946 323 aaPredicted RBP14.38□□□□□ -0.11
UPF3A-204ENST00000475218 SLC20A2Q08357 652 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 ARL13BQ3SXY8 428 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 RETSATQ6NUM9 610 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 DNAJC24Q6P3W2 148 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 LEKR1Q6ZMV7 388 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 MFSD2AQ8NA29 543 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 KLK6Q92876 244 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 TBC1D31Q96DN5 1066 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 188.4 ms