RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 APOHP02749 345 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 MYZAPP0CAP1 466 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 GRK5P34947 590 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 STT3AP46977 705 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 DLG1Q12959 904 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 MORC3Q14149 939 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 RBBP5Q15291 538 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 SLC35G1Q2M3R5 365 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 SYTL3Q4VX76 610 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 HIBCHQ6NVY1 386 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 KIAA1324Q6UXG2 1013 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 TOGARAM2Q6ZUX3 1019 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 FAM186BQ8IYM0 893 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 SPICE1Q8N0Z3 855 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 CIARTQ8N365 385 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 LMNTD1Q8N9Z9 388 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 TEX45Q8NA69 505 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 GPT2Q8TD30 523 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 SLC35F5Q8WV83 523 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 BICD1Q96G01 975 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 CCDC138Q96M89 665 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 ABHD16BQ9H3Z7 469 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 SCRT2Q9NQ03 307 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 HELLSQ9NRZ9 838 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 DAAM1Q9Y4D1 1078 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 SAA2-SAA4A0A096LPE2 208 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 A0A0U1RQJ8 604 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 A0A1B0GU03 582 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 DYTNA2CJ06 578 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 SLC38A8A6NNN8 435 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 KIF28PB7ZC32 967 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 TMCC1O94876 653 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 HARSP12081 509 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 AMD1P17707 334 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 PRPH2P23942 346 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 TYK2P29597 1187 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 C21orf33P30042 268 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 CDH12P55289 794 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 BRWD1-AS2P59051 145 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 MON1BQ7L1V2 547 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 ANKS1BQ7Z6G8 1248 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 DPP9Q86TI2 863 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 MYPOPQ86VE0 399 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 PGBD5Q8N414 524 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 IL17RCQ8NAC3 791 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 REXO5Q96IC2 774 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 SGCZQ96LD1 299 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 RIPOR3Q96MK2 946 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 PSMD1Q99460 953 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 NPAS1Q99742 590 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 HDHD5Q9BXW7 423 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 MALT1Q9UDY8 824 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 TAGLN3Q9UI15 199 aa3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 SRPRBQ9Y5M8 271 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 TP53BP1Q12888 1972 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-212ENST00000474059 MAGEA13PA6NCF6 341 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 RASA4BC9J798 803 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 RASA4O43374 803 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 NCK2O43639 380 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 SERPINI2O75830 405 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 HOXC13P31276 330 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 RBM6P78332 1123 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 C10orf62Q5T681 223 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 FAM171A1Q5VUB5 890 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 XRRA1Q6P2D8 792 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 HDAC7Q8WUI4 952 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 SCMH1Q96GD3 660 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 UHRF2Q96PU4 802 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 ARPC5LQ9BPX5 153 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 CLK4Q9HAZ1 481 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 SLC22A11Q9NSA0 550 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 RIPOR2Q9Y4F9 1068 aa3.48□□□□□ -1.85
CCDC88A-212ENST00000474059 MST1RQ04912 1400 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 ANOS1P23352 680 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 TNFSF4P23510 183 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 PRKCHP24723 683 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 DMP1Q13316 513 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 CCDC6Q16204 474 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 EFHC1Q5JVL4 640 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 FAM209BQ5JX69 171 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 RHBDF2Q6PJF5 856 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 DGLUCYQ7Z3D6 616 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 RNF144BQ7Z419 303 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 OR2C3Q8N628 320 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 DBF4BQ8NFT6 615 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 MORC4Q8TE76 937 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 TXNDC15Q96J42 360 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 ZNF333Q96JL9 665 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 MSTO1Q9BUK6 570 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 CHMP4AQ9BY43 222 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 CCDC134Q9H6E4 229 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 PLCB1Q9NQ66 1216 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 STARD7Q9NQZ5 370 aa3.47□□□□□ -1.85
CCDC88A-212ENST00000474059 ABHD14A-ACY1A0A1B0GW23 586 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 PLEKHD1A6NEE1 506 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 BAG4O95429 457 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 GLP2RO95838 553 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 SETSIPP0DME0 302 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 DGKAP23743 735 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 CYP2J2P51589 502 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms