RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TNKS2Q9H2K2 1166 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 PPARGC1AQ9UBK2 798 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 CA5BQ9Y2D0 317 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 DAAM1Q9Y4D1 1078 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 FARP1Q9Y4F1 1045 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 TRPM6Q9BX84 2022 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 CACNA1GO43497 2377 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 C2CD4BA6NLJ0 364 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 UNGP13051 313 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 SDC4P31431 198 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 PTPN9P43378 593 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 ARRB1P49407 418 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 COPB1P53618 953 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 ARF5P84085 180 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 NRG1Q02297 640 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 GNA12Q03113 381 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 SYCP1Q15431 976 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 SMAD1Q15797 465 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 CDO1Q16878 200 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 SETMARQ53H47 684 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 SFMBT2Q5VUG0 894 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 TRIM72Q6ZMU5 477 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 DPY19L3Q6ZPD9 716 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 DRC7Q8IY82 874 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 TMEM145Q8NBT3 493 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 SPON2Q9BUD6 331 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 ATP13A1Q9HD20 1204 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 NDFIP2Q9NV92 336 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 IL36AQ9UHA7 158 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 LIMA1Q9UHB6 759 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 WASF2Q9Y6W5 498 aa19.2■□□□□ 0.66
CCDC88B-206ENST00000473405 KALRNO60229 2985 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 LGALS16A8MUM7 142 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 FAM72CH0Y354 149 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 PRAMEF26H0Y7S4 382 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 RNGTTO60942 597 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 CD160O95971 181 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 PRNPP04156 253 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 ITGAVP06756 1048 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 TPM2P07951 284 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 PRLRP16471 622 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 ADRA1BP35368 520 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 RXRGP48443 463 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 HDAC4P56524 1084 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 GSCP56915 257 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 MYL5Q02045 173 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 OVGP1Q12889 678 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 BNIP3Q12983 259 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 ZNF284Q2VY69 593 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 FAM72AQ5TYM5 149 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 FAM72DQ6L9T8 149 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 NLRP14Q86W24 1093 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 FAM72BQ86X60 149 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 CCDC185Q8N715 623 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 MDM1Q8TC05 714 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 CENPIQ92674 756 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 HDAC8Q9BY41 377 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 CEP44Q9C0F1 390 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 HSD3B7Q9H2F3 369 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 OR12D3Q9UGF7 316 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 ACTL7AQ9Y615 435 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 MYLKQ15746 1914 aa19.19■□□□□ 0.66
CCDC88B-206ENST00000473405 ADAMTS20P59510 1910 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 A0A1W2PQU0 124 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 FAM149AA5PLN7 773 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 LEFTY1O75610 366 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 STAT1P42224 750 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 DNAJC3Q13217 504 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 CAMK2BQ13554 666 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 CLEC16AQ2KHT3 1053 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 CCDC157Q569K6 752 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 ARSIQ5FYB1 569 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 RETSATQ6NUM9 610 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 NEK5Q6P3R8 708 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 DHRS13Q6UX07 377 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 ERN2Q76MJ5 926 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 STRADAQ7RTN6 431 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 APTXQ7Z2E3 356 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 GALNT15Q8N3T1 639 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 OXR1Q8N573 874 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 EID2Q8N6I1 236 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 PCDH20Q8N6Y1 951 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 CNDP2Q96KP4 475 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 MYOCQ99972 504 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 MAGEB5Q9BZ81 275 aa19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 CCDC86Q9H6F5 360 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 ZFR2Q9UPR6 939 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 FCF1Q9Y324 198 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 TDRD6O60522 2096 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-206ENST00000473405 ENC1O14682 589 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 RFC1P35251 1148 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 ACVRL1P37023 503 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 NSFP46459 744 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 ACADVLP49748 655 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 STAT4Q14765 748 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 NCAPHQ15003 741 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 STX1AQ16623 288 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 TMEM259Q4ZIN3 620 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 HORMAD1Q86X24 394 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 PHF13Q86YI8 300 aaPredicted RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms