RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GSCP56915 257 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 SUZ12Q15022 739 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 STRADAQ7RTN6 431 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 TMPRSS7Q7RTY8 843 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 PHF13Q86YI8 300 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 CCDC185Q8N715 623 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 CHST14Q8NCH0 376 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 OR2A12Q8NGT7 310 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 GRIN3AQ8TCU5 1115 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM131CQ96AQ9 280 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 SKA1Q96BD8 255 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 AGPAT1Q99943 283 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 MAGEB5Q9BZ81 275 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 PPARGC1AQ9UBK2 798 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 OR12D3Q9UGF7 316 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 ARID1BQ8NFD5 2236 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 C10orf142B7Z368 130 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 TEX33O43247 280 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 CHRNA3P32297 505 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 RFC1P35251 1148 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 RECQLP46063 649 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 CLCN6P51797 869 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 HDAC4P56524 1084 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 GNA12Q03113 381 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 PRAMEF14Q5SWL7 426 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 CAVIN1Q6NZI2 390 aaKnown RBP16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 DNAJC24Q6P3W2 148 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 WDR59Q6PJI9 974 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 ZNF783Q6ZMS7 281 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 MON1BQ7L1V2 547 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 PRPF39Q86UA1 669 aaKnown RBP16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 C3orf20Q8ND61 904 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 KDM4CQ9H3R0 1056 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 DNAI1Q9UI46 699 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 TPX2Q9ULW0 747 aaKnown RBP16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 RAXQ9Y2V3 346 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 LOC400499M0QZD8 3231 aa16.06■□□□□ 0.16
CCDC88B-205ENST00000472524 ANKRD11Q6UB99 2663 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 A0A1W2PR77 199 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM149AA5PLN7 773 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM72CH0Y354 149 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 LATO43561 262 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FERP16591 822 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 ACVRL1P37023 503 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 SERPINH1P50454 418 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 DNA2P51530 1060 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 ARF5P84085 180 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 NRG1Q02297 640 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 COL28A1Q2UY09 1125 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 SLC45A4Q5BKX6 768 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 PIP5KL1Q5T9C9 394 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM72AQ5TYM5 149 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 MANEALQ5VSG8 457 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 NAPEPLDQ6IQ20 393 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM72DQ6L9T8 149 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 RETSATQ6NUM9 610 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM72BQ86X60 149 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 CENPIQ92674 756 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 ARRDC3Q96B67 414 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 TBC1D31Q96DN5 1066 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 MCEEQ96PE7 176 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 OSBPL2Q9H1P3 480 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 DYRK4Q9NR20 520 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 NDFIP2Q9NV92 336 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 IL36AQ9UHA7 158 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 FCF1Q9Y324 198 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 ACTL7AQ9Y615 435 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 BAHCC1Q9P281 2608 aa16.05■□□□□ 0.16
CCDC88B-205ENST00000472524 ANKRD36A6QL64 1941 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 A0A1B0GTQ1 180 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 ANKRD62A6NC57 917 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 SIGLEC16A6NMB1 481 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 SMTNL1A8MU46 457 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 RNF103O00237 685 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 CCP110O43303 1012 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 PCDHGA12O60330 932 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 ZMPSTE24O75844 475 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 LRIG2O94898 1065 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 PRNPP04156 253 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 PLEKP08567 350 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 CCDC172P0C7W6 258 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 RHOQP17081 205 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 GRK6P43250 576 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 TAS2R38P59533 333 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 C1QBPQ07021 282 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 CCDC157Q569K6 752 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 ARSIQ5FYB1 569 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 SCYL2Q6P3W7 929 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 DPY19L3Q6ZPD9 716 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 TRIM69Q86WT6 500 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 GATAD2AQ86YP4 633 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 TMIEQ8NEW7 156 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 KLK6Q92876 244 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 ELF4Q99607 663 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 MYOCQ99972 504 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 BPIFA3Q9BQP9 254 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 PREBQ9HCU5 417 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 RTN4Q9NQC3 1192 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 GDF3Q9NR23 364 aa16.04■□□□□ 0.16
CCDC88B-205ENST00000472524 TMEM248Q9NWD8 314 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms