RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ZCCHC23Q6ZST2 131 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ULK2Q8IYT8 1036 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 FBXO30Q8TB52 745 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 PMEPA1Q969W9 287 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ITCHQ96J02 903 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ASB8Q9H765 288 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 PNMA8CA0A1B0GUJ8 204 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 DCLK1O15075 740 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 FBXO21O94952 628 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ERCC2P18074 760 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CASP9P55211 416 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ELAVL2Q12926 359 aaKnown RBP13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ATG9AQ7Z3C6 839 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ARMC8Q8IUR7 673 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 PPCSQ9HAB8 311 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 SEMA4BQ9NPR2 832 aaPredicted RBP13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CATSPERZQ9NTU4 200 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ADPRHL2Q9NX46 363 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 SLC12A4Q9UP95 1085 aa13.41□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CLPTM1O96005 669 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 TATDN2Q93075 761 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CD248Q9HCU0 757 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 RASSF1Q9NS23 344 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 UXTQ9UBK9 157 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 OTOL1A6NHN0 477 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 NT5C1B-RDH14C9J2C7 533 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 TEX46H3BTG2 121 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 PGK1P00558 417 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 H2AFXP16104 143 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 SERPINA4P29622 427 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 S100A3P33764 101 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CRADDP78560 199 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ZNF563Q8TA94 476 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 TP53INP1Q96A56 240 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 C17orf75Q9HAS0 396 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 EQTNQ9NQ60 294 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 KANSL1LA0AUZ9 987 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 BCL10O95999 233 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 OR52L1Q8NGH7 329 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 PANX3Q96QZ0 392 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 NOL6Q9H6R4 1146 aaKnown RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 TCF7L2Q9NQB0 619 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 RPA3P35244 121 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 BUD31P41223 144 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ADCYAP1R1P41586 468 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 WASP42768 502 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 NRF1Q16656 503 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 SLC45A4Q5BKX6 768 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 PLPP4Q5VZY2 271 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ZNF605Q86T29 641 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 SAMD3Q8N6K7 520 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 REPS1Q96D71 796 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ASAH2Q9NR71 780 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 DAPK2Q9UIK4 370 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CLASP1Q7Z460 1538 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 ZNF839A8K0R7 811 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 WRBO00258 174 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 IGFALSP35858 605 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CYP2A13Q16696 494 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 N4BP2L1Q5TBK1 243 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 RAD9BQ6WBX8 426 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 OGDHLQ9ULD0 1010 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 BARX2Q9UMQ3 279 aaPredicted RBP13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 IL12RB1P42701 662 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 GSTM5P46439 218 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 POMKQ9H5K3 350 aa13.4□□□□□ -0.26
NPHP3-ACAD11-201ENST00000471702 CNTNAP5Q8WYK1 1306 aa13.4□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 NEO1Q92859 1461 aa13.4□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 A0A0X1KG70 313 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CD3EAPO15446 510 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TBL1XO60907 577 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LRATO95237 230 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 NR2F1P10589 423 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 HTR1BP28222 390 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MMP13P45452 471 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LPCAT2Q7L5N7 544 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CD302Q8IX05 232 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 KBTBD2Q8IY47 623 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 AGBL3Q8NEM8 1001 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ACTL9Q8TC94 416 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RORBQ92753 470 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 NRKQ7Z2Y5 1582 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 FAM92AA1XBS5 289 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 STX16-NPEPL1H3BU86 382 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 STX16O14662 325 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ATP5C1P36542 298 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ACSM2AQ08AH3 577 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ACSM2BQ68CK6 577 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SCIMPQ6UWF3 145 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ZYG11AQ6WRX3 759 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ALLCQ8N6M5 410 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 OR6K2Q8NGY2 324 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 GPER1Q99527 375 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CLEC4AQ9UMR7 237 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RGS14O43566 566 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SERPINA3P01011 423 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LRIG3Q6UXM1 1119 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CASKIN2Q8WXE0 1202 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PRCCQ92733 491 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms