RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 BBS7Q8IWZ6 715 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 CMTM8Q8IZV2 173 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 BBS5Q8N3I7 341 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 ARFGAP2Q8N6H7 521 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 OR7D4Q8NG98 312 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 OR52K2Q8NGK3 314 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 OR52K1Q8NGK4 314 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 GSDMBQ8TAX9 411 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 FBF1Q8TES7 1133 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 TCEAL4Q96EI5 215 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 CFAP36Q96G28 342 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 XPO6Q96QU8 1125 aaKnown RBP9.55□□□□□ -0.88
VPS52-216ENST00000471309 CDCA3Q99618 268 aaPredicted RBP9.55□□□□□ -0.88
VPS52-216ENST00000471309 DHRS4Q9BTZ2 278 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 POLR1EQ9GZS1 481 aaKnown RBP9.55□□□□□ -0.88
VPS52-216ENST00000471309 SLC25A51Q9H1U9 297 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 SFXN1Q9H9B4 322 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 PLAC1Q9HBJ0 212 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 VPS45Q9NRW7 570 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 NOVA2Q9UNW9 492 aaKnown RBP9.55□□□□□ -0.88
VPS52-216ENST00000471309 TTLL3Q9Y4R7 772 aa9.55□□□□□ -0.88
VPS52-216ENST00000471309 A0A0D9SEW6 157 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 CCDC195A0A1B0GUA6 201 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 H0Y626 953 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 PER2O15055 1255 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 USP12O75317 370 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 C1QAP02745 245 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 PRKCHP24723 683 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ADRA1AP35348 466 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 NPY2RP49146 381 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SESN2P58004 480 aaPredicted RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 MAGOHP61326 146 aaKnown RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 SKOR1P84550 965 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 GABPB1Q06547 395 aaPredicted RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 CDH17Q12864 832 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 USP4Q13107 963 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 NR1H3Q13133 447 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 CDH18Q13634 790 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 KCNC3Q14003 757 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 FRG1Q14331 258 aaKnown RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 ZNF235Q14590 738 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SLC14A2Q15849 920 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ZNF77Q15935 545 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 MPPE1Q53F39 396 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 IL31Q6EBC2 164 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ZNF449Q6P9G9 518 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 KDELC1Q6UW63 502 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 CYS1Q717R9 158 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 GRASPQ7Z6J2 395 aaPredicted RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 MPP5Q8N3R9 675 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 DCAF4L2Q8NA75 395 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 TDRD5Q8NAT2 981 aaKnown RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 IPMKQ8NFU5 416 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SPATA22Q8NHS9 363 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ARRDC2Q8TBH0 407 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SH3RF2Q8TEC5 729 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 GDPD5Q8WTR4 605 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ARNTL2Q8WYA1 636 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SPOCK2Q92563 424 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 USP13Q92995 863 aaPredicted RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 TADA1Q96BN2 335 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 TMA16Q96EY4 203 aaKnown RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 PAFAH2Q99487 392 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 TBL1YQ9BQ87 522 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 IL22Q9GZX6 179 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 MUC3BQ9H195 1237 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 TLE6Q9H808 572 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 CERS4Q9HA82 394 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SLC28A3Q9HAS3 691 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ATP13A1Q9HD20 1204 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 NT5MQ9NPB1 228 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 TDP1Q9NUW8 608 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 DZANK1Q9NVP4 752 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SYBUQ9NX95 663 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 BFARQ9NZS9 450 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 SAMD15Q9P1V8 674 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 BCCIPQ9P287 314 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS52-216ENST00000471309 PSMC3IPQ9P2W1 217 aaPredicted RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 UBA2Q9UBT2 640 aaPredicted RBP9.54□□□□□ -0.88
VPS52-216ENST00000471309 CTNNAL1Q9UBT7 734 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 ADAM21Q9UKJ8 722 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 MAD1L1Q9Y6D9 718 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 NUP205Q92621 2012 aa9.54□□□□□ -0.88
VPS52-216ENST00000471309 NOTCH4Q99466 2003 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 CXorf51AA0A1B0GTR3 108 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 MAGEB16A2A368 324 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 SCAMP3O14828 347 aaKnown RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 PRAMEF12O95522 483 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 MT-CYBP00156 380 aaPredicted RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 WEE1P30291 646 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 HPDP32754 393 aaPredicted RBP9.53□□□□□ -0.88
VPS52-216ENST00000471309 NRIP1P48552 1158 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 GYS2P54840 703 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 PPP2R2AP63151 447 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 NTHL1P78549 312 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 NAB1Q13506 487 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 OLIG2Q13516 323 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 CRYMQ14894 314 aa9.53□□□□□ -0.88
VPS52-216ENST00000471309 EFTUD2Q15029 972 aaKnown RBP eCLIP9.53□□□□□ -0.885e-10■■□□□ 13.4
VPS52-216ENST00000471309 TMED2Q15363 201 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms