RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 A0A1W2PQH9 124 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 NVLO15381 856 aaKnown RBP19.39■□□□□ 0.7
VIM-203ENST00000469543 IRAK2O43187 625 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 HLA-DQB2P05538 268 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 CYBAP13498 195 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 GRK2P25098 689 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 EPHA3P29320 983 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 CCND3P30281 292 aaPredicted RBP19.39■□□□□ 0.7
VIM-203ENST00000469543 NAGLUP54802 743 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 SLC34A1Q06495 639 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 MRPL10Q7Z7H8 261 aaKnown RBP19.39■□□□□ 0.7
VIM-203ENST00000469543 TTC9BQ8N6N2 239 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 UCMAQ8WVF2 138 aa19.39■□□□□ 0.7
VIM-203ENST00000469543 RBM22Q9NW64 420 aaKnown RBP eCLIP19.39■□□□□ 0.7
VIM-203ENST00000469543 GJB3O75712 270 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 DDHD2O94830 711 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 FAM163BP0C2L3 166 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 SLC35E2BP0CK96 405 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 NPY2RP49146 381 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 RAP1GDS1P52306 607 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 ZNF789Q5FWF6 425 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 LRRC74BQ6ZQY2 392 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 ZNF333Q96JL9 665 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 STOML1Q9UBI4 398 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 PPM1HQ9ULR3 514 aa19.39■□□□□ 0.69
VIM-203ENST00000469543 MTF2Q9Y483 593 aaPredicted RBP19.39■□□□□ 0.69
VIM-203ENST00000469543 MAGEC1O60732 1142 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 BAG2O95816 211 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 IGLV3-25P01717 112 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 ARSAP15289 507 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 SERPINB5P36952 375 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 NAB1Q13506 487 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 IHHQ14623 411 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 LRRC36Q1X8D7 754 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 CCDC153Q494R4 210 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 NAPEPLDQ6IQ20 393 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 RPS27LQ71UM5 84 aaKnown RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 PYDC1Q8WXC3 89 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 KLHL5Q96PQ7 755 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 ACE2Q9BYF1 805 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 MMADHCQ9H3L0 296 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 GEMIN8Q9NWZ8 242 aaKnown RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 TNFRSF10BO14763 440 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 TRIM13O60858 407 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 ELNP15502 786 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 PAPOLAP51003 745 aaKnown RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 USP46P62068 366 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 DLG1Q12959 904 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 TMEM198Q66K66 360 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 SPATA2LQ8IUW3 424 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 CENPLQ8N0S6 344 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 FSTL5Q8N475 847 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 ISL2Q96A47 359 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 SCYL1Q96KG9 808 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 MARK4Q96L34 752 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 TBL1YQ9BQ87 522 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 C1QTNF1Q9BXJ1 281 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 ARHGEF38Q9NXL2 777 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 PRG3Q9Y2Y8 225 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 PCDHB12Q9Y5F1 795 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 HS3ST4Q9Y661 456 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 ERI2A8K979 691 aaKnown RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 TMEM233B4DJY2 109 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 PAX7P23759 505 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 MSX2P35548 267 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 GRIA4P48058 902 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 SEPT6Q14141 434 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 ARL13AQ5H913 290 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 TCHHL1Q5QJ38 904 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 PPM1LQ5SGD2 360 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 RTN4RL1Q86UN2 441 aaPredicted RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 TDRD5Q8NAT2 981 aaKnown RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 NXNL1Q96CM4 212 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 NDNQ99608 321 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 KIFC1Q9BW19 673 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 TRPV6Q9H1D0 765 aa19.38■□□□□ 0.69
VIM-203ENST00000469543 STX18Q9P2W9 335 aaKnown RBP19.38■□□□□ 0.69
VIM-203ENST00000469543 NEMP2A6NFY4 417 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 J3KR12 359 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 MTSS1O43312 755 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 ATP6V1C1P21283 382 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 CCR1P32246 355 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 YWHAHQ04917 246 aaPredicted RBP19.37■□□□□ 0.69
VIM-203ENST00000469543 TUSC3Q13454 348 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 PRPSAP1Q14558 356 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 CFAP157Q5JU67 520 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 LDB1Q86U70 411 aaPredicted RBP19.37■□□□□ 0.69
VIM-203ENST00000469543 SAPCD2Q86UD0 394 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 HPS6Q86YV9 775 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 VAT1Q99536 393 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 NUF2Q9BZD4 464 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 OSBPL2Q9H1P3 480 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 GLOD4Q9HC38 313 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 OXSMQ9NWU1 459 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 DNAJB4Q9UDY4 337 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 ZDHHC2Q9UIJ5 367 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 TLK1Q9UKI8 766 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 RPL26L1Q9UNX3 145 aaKnown RBP19.37■□□□□ 0.69
VIM-203ENST00000469543 MAGEB16A2A368 324 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 M0QZQ0 153 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms