RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 ATP1A2P50993 1020 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 EFTUD2Q15029 972 aaKnown RBP eCLIP19.3■□□□□ 0.682e-8■■□□□ 12.6
SMC4-209ENST00000468653 TMED2Q15363 201 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 RAB30Q15771 203 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 TNFAIP8L3Q5GJ75 292 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 RNF219Q5W0B1 726 aaPredicted RBP19.3■□□□□ 0.68
SMC4-209ENST00000468653 GRASPQ7Z6J2 395 aaPredicted RBP19.3■□□□□ 0.68
SMC4-209ENST00000468653 BBS7Q8IWZ6 715 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 FAM217AQ8IXS0 508 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 IPMKQ8NFU5 416 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 SH3RF2Q8TEC5 729 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 ZNF599Q96NL3 588 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 TBL1YQ9BQ87 522 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 NAT9Q9BTE0 207 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 MUC3BQ9H195 1237 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 ATP13A1Q9HD20 1204 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 SYBUQ9NX95 663 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 FETUBQ9UGM5 382 aa19.3■□□□□ 0.68
SMC4-209ENST00000468653 KDELR3O43731 214 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 MOSPD3O75425 235 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 PMPCBO75439 489 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 HOXD9P28356 352 aaPredicted RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 MAXP61244 160 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 PPP2R2AP63151 447 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 NTHL1P78549 312 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 GABPB1Q06547 395 aaPredicted RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 ZNF235Q14590 738 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 SLC5A9Q2M3M2 681 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 CXorf57Q6NSI4 855 aaKnown RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 TAOK1Q7L7X3 1001 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 BBS5Q8N3I7 341 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 TDRD5Q8NAT2 981 aaKnown RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 GSDMBQ8TAX9 411 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 FSD1LQ9BXM9 530 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 PIDD1Q9HB75 910 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 PDFQ9HBH1 243 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 HAUS2Q9NVX0 235 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 GFRA2O00451 464 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 ZNF197O14709 1029 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 LUC7L3O95232 432 aaKnown RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 PGAM1P18669 254 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 MSH2P43246 934 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 NPY2RP49146 381 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 TNK2Q07912 1038 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 CDH17Q12864 832 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 MPP3Q13368 585 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 ZNF783Q6ZMS7 281 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 CPXM2Q8N436 756 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 GDPD5Q8WTR4 605 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 DDI1Q8WTU0 396 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 BHMTQ93088 406 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 IMP4Q96G21 291 aaKnown RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 TRIM56Q9BRZ2 755 aaKnown RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 FICDQ9BVA6 458 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 LMAN2LQ9H0V9 348 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 PSMC3IPQ9P2W1 217 aaPredicted RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 UBA2Q9UBT2 640 aaPredicted RBP19.29■□□□□ 0.68
SMC4-209ENST00000468653 IKBKGQ9Y6K9 419 aa19.29■□□□□ 0.68
SMC4-209ENST00000468653 DOCK6Q96HP0 2047 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 E2F8A0AVK6 867 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 SOBPA7XYQ1 873 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 PIAS1O75925 651 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 NRIP1P48552 1158 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 CDH18Q13634 790 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 RASA2Q15283 850 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 KBTBD12Q3ZCT8 623 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 EMC10Q5UCC4 262 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 CYP4X1Q8N118 509 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 PAFAH2Q99487 392 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 SLC28A3Q9HAS3 691 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 PLAC1Q9HBJ0 212 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 EURLQ9NYK6 297 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 CCL26Q9Y258 94 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 CEP290O15078 2479 aa19.28■□□□□ 0.68
SMC4-209ENST00000468653 CBX4O00257 560 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 POU2F2P09086 479 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 CD86P42081 329 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 SKOR1P84550 965 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 DSC2Q02487 901 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 NIPAL4Q0D2K0 466 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 DUSP6Q16828 381 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 MPPE1Q53F39 396 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 PRSS36Q5K4E3 855 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 CERCAMQ5T4B2 595 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 COL13A1Q5TAT6 717 aaPredicted RBP19.27■□□□□ 0.68
SMC4-209ENST00000468653 STEAP4Q687X5 459 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 PRPF39Q86UA1 669 aaKnown RBP19.27■□□□□ 0.68
SMC4-209ENST00000468653 EXOC3L1Q86VI1 746 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 CCDC117Q8IWD4 279 aaPredicted RBP19.27■□□□□ 0.68
SMC4-209ENST00000468653 CTAGE3PQ8IX95 158 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 ZNF707Q96C28 371 aaPredicted RBP19.27■□□□□ 0.68
SMC4-209ENST00000468653 GDF15Q99988 308 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 ACE2Q9BYF1 805 aaPredicted RBP19.27■□□□□ 0.68
SMC4-209ENST00000468653 POLR1EQ9GZS1 481 aaKnown RBP19.27■□□□□ 0.68
SMC4-209ENST00000468653 TDP1Q9NUW8 608 aa19.27■□□□□ 0.68
SMC4-209ENST00000468653 ATP9BO43861 1147 aa19.27■□□□□ 0.67
SMC4-209ENST00000468653 POLBP06746 335 aa19.27■□□□□ 0.67
SMC4-209ENST00000468653 TPH1P17752 444 aa19.27■□□□□ 0.67
SMC4-209ENST00000468653 GLDCP23378 1020 aa19.27■□□□□ 0.67
SMC4-209ENST00000468653 PRKCHP24723 683 aa19.27■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms