RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 MILR1Q7Z6M3 343 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 B3GALNT2Q8NCR0 500 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM45AQ8TCE6 357 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 MRPL48Q96GC5 212 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 RIBC2Q9H4K1 309 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 DNAJC28Q9NX36 388 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 TMEM216Q9P0N5 145 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 DPP7Q9UHL4 492 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 RAMP2O60895 175 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 ZNF7P17097 686 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 SERPINH1P50454 418 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 NR1D2Q14995 579 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 FKBP1CQ5VVH2 108 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 MAGEE2Q8TD90 523 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 MRPS31Q92665 395 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 PCDHB18PQ96TA0 734 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 DYRK1BQ9Y463 629 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 CABYRO75952 493 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 SP100P23497 879 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 PRDX6P30041 224 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM183BPQ6ZVS7 135 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 STAG3L4Q8TBR4 150 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 NKD2Q969F2 451 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 BORCS5Q969J3 196 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 FBXO44Q9H4M3 255 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 C3orf18Q9UK00 162 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 SLC12A4Q9UP95 1085 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 H3BNX3 289 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 CCNA2P20248 432 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 PACS1Q6VY07 963 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 FBXO16Q8IX29 292 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 KBTBD2Q8IY47 623 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 SLC2A14Q8TDB8 520 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 OMA1Q96E52 524 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 CDH9Q9ULB4 789 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 SQORQ9Y6N5 450 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 CCNT2O60583 730 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 INSRRP14616 1297 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 IL12RB1P42701 662 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 RAB10P61026 200 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 C15orf59Q2T9L4 293 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 LIN52Q52LA3 116 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 BHMTQ93088 406 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 PLEKHG4BQ96PX9 1271 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 HGH1Q9BTY7 390 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM53CQ9NYF3 392 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 SALL4Q9UJQ4 1053 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 ZNF180Q9UJW8 692 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 BBIP1A8MTZ0 92 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 PTGIRP43119 386 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 EFEMP1Q12805 493 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 FAM187BQ17R55 369 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 INO80DQ53TQ3 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 TMEM63BQ5T3F8 832 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 RCN3Q96D15 328 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 POLR1BQ9H9Y6 1135 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 NFAT5O94916 1531 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 JAK1P23458 1154 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 TUBP50607 506 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 METTL21CQ5VZV1 264 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 ZNF605Q86T29 641 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 GSTCDQ8NEC7 633 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 ARHGEF3Q9NR81 526 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 TNFSF13BQ9Y275 285 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 SMIM22K7EJ46 135 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 STK40Q8N2I9 435 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 BTBD9Q96Q07 612 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 LHX5Q9H2C1 402 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 SETD4Q9NVD3 440 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 FETUBQ9UGM5 382 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 CHKBQ9Y259 395 aa19.24■□□□□ 0.67
CCDC88B-204ENST00000463837 SLC12A8A0AV02 714 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 CENPXA8MT69 81 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SEC22BO75396 215 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 ALOX5P09917 674 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 HALP42357 657 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 RHOAP61586 193 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 CXCL9Q07325 125 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 TAB1Q15750 504 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 DNAJC14Q6Y2X3 702 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 LRRC49Q8IUZ0 686 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SYTL1Q8IYJ3 562 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 NKAPQ8N5F7 415 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SYNDIG1Q9H7V2 258 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SNX15Q9NRS6 342 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 VAV3Q9UKW4 847 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 INVSQ9Y283 1065 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 GRIN2DO15399 1336 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 GNG14A0A1W2PPG7 69 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 CXCL11O14625 94 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 HOXC6P09630 235 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 RPL7AP62424 266 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 ELAVL2Q12926 359 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 ZNF554Q86TJ5 538 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 TPSB2P20231 275 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 ZNF846Q147U1 533 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 TPSAB1Q15661 275 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 SLC1A5Q15758 541 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 RFX4Q33E94 735 aa19.23■□□□□ 0.67
CCDC88B-204ENST00000463837 CASP12Q6UXS9 341 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms