RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 NEBLO76041 1014 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 ZRANB2O95218 330 aaKnown RBP eCLIP10.9□□□□□ -0.66
UBR4-208ENST00000459947 RETP07949 1114 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 CA4P22748 312 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 PDK1Q15118 436 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 SORCS1Q8WY21 1168 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 HMCESQ96FZ2 354 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 TSGA13Q96PP4 275 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 RNF157Q96PX1 679 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 DUSP15Q9H1R2 295 aaPredicted RBP10.9□□□□□ -0.66
UBR4-208ENST00000459947 PRR5-ARHGAP8B1AHC4 643 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 TAS2R40P59535 323 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 RHOAP61586 193 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 AP1S1P61966 158 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 SMTNL2Q2TAL5 461 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 ARTNQ5T4W7 220 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 NEK5Q6P3R8 708 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 SFTPA1Q8IWL2 248 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 ACRBPQ8NEB7 543 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 OR2AP1Q8NGE2 309 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 CEP76Q8TAP6 659 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 CINPQ9BW66 212 aaPredicted RBP10.9□□□□□ -0.66
UBR4-208ENST00000459947 MFHAS1Q9Y4C4 1052 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 BDP1A6H8Y1 2624 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 TTC34A8MYJ7 566 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 SNAP91O60641 907 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 CHRNA3P32297 505 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 COPAP53621 1224 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 RWDD2BP57060 319 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 GSE1Q14687 1217 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 PMS2CLQ68D20 193 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 PEX26Q7Z412 305 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 FAM174AQ8TBP5 190 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 OMDQ99983 421 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 CPEB1Q9BZB8 566 aaKnown RBP10.9□□□□□ -0.66
UBR4-208ENST00000459947 BTBD1Q9H0C5 482 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 IL36AQ9UHA7 158 aa10.9□□□□□ -0.66
UBR4-208ENST00000459947 IPO11Q9UI26 975 aaKnown RBP10.9□□□□□ -0.66
UBR4-208ENST00000459947 A0A0D9SEW6 157 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 HLA-EP13747 358 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 AMPD1P23109 780 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 CTNNA1P35221 906 aaKnown RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 ARF5P84085 180 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 NSUN2Q08J23 767 aaKnown RBP eCLIP10.89□□□□□ -0.67
UBR4-208ENST00000459947 CCDC173Q0VFZ6 552 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 GALNT2Q10471 571 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 ZNF235Q14590 738 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 TSSK4Q6SA08 328 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 GANCQ8TET4 914 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 PTPRN2Q92932 1015 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SLC39A8Q9C0K1 460 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 CCNCP24863 283 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 ACVRL1P37023 503 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 CTSOP43234 321 aaPredicted RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 PAPOLAP51003 745 aaKnown RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 CCR5P51681 352 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 KCNT1Q5JUK3 1230 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 PRR23BQ6ZRT6 265 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 RFX6Q8HWS3 928 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 NDUFAF2Q8N183 169 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 STK40Q8N2I9 435 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 TTC13Q8NBP0 860 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 RUBCNQ92622 972 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SKA1Q96BD8 255 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 PPP1R2P1Q96PQ5 205 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 HDAC8Q9BY41 377 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 FRMD8P1Q9BZ68 369 aaPredicted RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 NOL6Q9H6R4 1146 aaKnown RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 PREBQ9HCU5 417 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 DKK3Q9UBP4 350 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SLCO3A1Q9UIG8 710 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 REXO2Q9Y3B8 237 aaKnown RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 PCDHA3Q9Y5H8 950 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SZT2Q5T011 3432 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 IGHV1OR15-9A0A0B4J2B8 117 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 HACD1B0YJ81 288 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 DFFAO00273 331 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SDHBP21912 280 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 TAZQ16635 292 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 PLK5Q496M5 336 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SLC45A4Q5BKX6 768 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 SLC9A4Q6AI14 798 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 KIAA1211LQ6NV74 962 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 CYP2U1Q7Z449 544 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 TRIM58Q8NG06 486 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 HAUS1Q96CS2 278 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 WSB2Q9NYS7 404 aaPredicted RBP10.89□□□□□ -0.67
UBR4-208ENST00000459947 DNPEPQ9ULA0 475 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 R4GN57 208 aa10.89□□□□□ -0.67
UBR4-208ENST00000459947 TMCC1O94876 653 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 SLC8A1P32418 973 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 PSMD8P48556 350 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 STK19P49842 368 aaPredicted RBP10.88□□□□□ -0.67
UBR4-208ENST00000459947 SLC14A2Q15849 920 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 TFDP3Q5H9I0 405 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 ARHGAP12Q8IWW6 846 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 OR2T34Q8NGX1 318 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 PIP4K2CQ8TBX8 421 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 MAIP1Q8WWC4 291 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 HDAC11Q96DB2 347 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms