RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 RABEPKQ7Z6M1 372 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 TBC1D3Q8IZP1 549 aaPredicted RBP19.07■□□□□ 0.64
USP39-209ENST00000458268 CEP76Q8TAP6 659 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 ZNF564Q8TBZ8 553 aaPredicted RBP19.07■□□□□ 0.64
USP39-209ENST00000458268 FNIP1Q8TF40 1166 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 BIRC7Q96CA5 298 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 HMCESQ96FZ2 354 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 CHP1Q99653 195 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 RTKNQ9BST9 563 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 ZDHHC6Q9H6R6 413 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 DYRK4Q9NR20 520 aa19.07■□□□□ 0.64
USP39-209ENST00000458268 EVLQ9UI08 416 aaPredicted RBP19.07■□□□□ 0.64
USP39-209ENST00000458268 CHD5Q8TDI0 1954 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 MCF2LO15068 1137 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 FGF10O15520 208 aaPredicted RBP19.06■□□□□ 0.64
USP39-209ENST00000458268 ZMPSTE24O75844 475 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 CYP1A2P05177 515 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 SERPINF2P08697 491 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 HNRNPH3P31942 346 aaKnown RBP19.06■□□□□ 0.64
USP39-209ENST00000458268 CLCN6P51797 869 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 CNTN1Q12860 1018 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 ARSIQ5FYB1 569 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 KIAA0895LQ68EN5 471 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 SLC23A3Q6PIS1 610 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 DPY19L3Q6ZPD9 716 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 CNGA4Q8IV77 575 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 OR2A12Q8NGT7 310 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 CCDC42Q96M95 316 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 ACE2Q9BYF1 805 aaPredicted RBP19.06■□□□□ 0.64
USP39-209ENST00000458268 KLC2Q9H0B6 622 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 DLL3Q9NYJ7 618 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 IL36AQ9UHA7 158 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 IP6K2Q9UHH9 426 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.06■□□□□ 0.64
USP39-209ENST00000458268 SLCO1B1Q9Y6L6 691 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 DMXL1Q9Y485 3027 aa19.06■□□□□ 0.64
USP39-209ENST00000458268 A0A1B0GTW7 788 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 MYO1FO00160 1098 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 DFFAO00273 331 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 CTSLP07711 333 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 MAT2AP31153 395 aaKnown RBP19.05■□□□□ 0.64
USP39-209ENST00000458268 HOXD12P35452 270 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 DRD3P35462 400 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 SEMA3BQ13214 749 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 PIGHQ14442 188 aaPredicted RBP19.05■□□□□ 0.64
USP39-209ENST00000458268 SLC18A3Q16572 532 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 ZFYVE27Q5T4F4 411 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 LAYNQ6UX15 382 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 RFX8Q6ZV50 586 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 ADAT2Q7Z6V5 191 aaKnown RBP19.05■□□□□ 0.64
USP39-209ENST00000458268 NOL6Q9H6R4 1146 aaKnown RBP19.05■□□□□ 0.64
USP39-209ENST00000458268 NHEJ1Q9H9Q4 299 aaPredicted RBP19.05■□□□□ 0.64
USP39-209ENST00000458268 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.05■□□□□ 0.64
USP39-209ENST00000458268 PPM1HQ9ULR3 514 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 FZD4Q9ULV1 537 aa19.05■□□□□ 0.64
USP39-209ENST00000458268 TP53BP1Q12888 1972 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 ALOX15BO15296 676 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 BCAT2O15382 392 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 PRNPP04156 253 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 H2AFZP0C0S5 128 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 IL1R2P27930 398 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 GKP32189 559 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 ARL4AP40617 200 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 VASPP50552 380 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 CCNHP51946 323 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 ADPRHP54922 357 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 GEMIN4P57678 1058 aaKnown RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 SLC20A2Q08357 652 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 KRT81Q14533 505 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 CARD16Q5EG05 197 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 ATXN7L2Q5T6C5 722 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 PEAR1Q5VY43 1037 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 SARM1Q6SZW1 724 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 H2AFVQ71UI9 128 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 CPNE8Q86YQ8 564 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 PCDH20Q8N6Y1 951 aaKnown RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 OR2T34Q8NGX1 318 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 ARRDC3Q96B67 414 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 NCAPGQ9BPX3 1015 aa19.04■□□□□ 0.64
USP39-209ENST00000458268 HECAQ9UBI9 543 aaPredicted RBP19.04■□□□□ 0.64
USP39-209ENST00000458268 PCDH15Q96QU1 1955 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 H3BRJ5 948 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 RNF103O00237 685 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 KRIT1O00522 736 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 ARHGAP33O14559 1287 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 KDELR3O43731 214 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 LEFTY1O75610 366 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 TMCC1O94876 653 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 SYPP08247 313 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 ERCC2P18074 760 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 CSNK1EP49674 416 aaKnown RBP19.03■□□□□ 0.64
USP39-209ENST00000458268 ZNF75DP51815 510 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 RHOAP61586 193 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 PPP2CBP62714 309 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 PPP2CAP67775 309 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 GRIK2Q13002 908 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 MAPK8IP2Q13387 824 aaPredicted RBP19.03■□□□□ 0.64
USP39-209ENST00000458268 TXNRD3NBQ6F5E7 133 aa19.03■□□□□ 0.64
USP39-209ENST00000458268 CYP4V2Q6ZWL3 525 aaPredicted RBP19.03■□□□□ 0.64
USP39-209ENST00000458268 MINDY1Q8N5J2 469 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms