RNA–Protein interactions for RNA: ENST00000444878.5

RBM39-216, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 2,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-216	ENST00000444878	RPRD1A	Q96P16	312 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	CCSER2	Q9H7U1	834 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	SP110	Q9HB58	689 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	SNX15	Q9NRS6	342 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	KLC4	Q9NSK0	619 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	TXLNG	Q9NUQ3	528 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	OGDHL	Q9ULD0	1010 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	SLC38A8	A6NNN8	435 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	GOLGA8T	H3BQL2	631 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	TIMM44	O43615	452 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	ATP5H	O75947	161 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	IGLV3-27	P01718	113 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	ZDHHC11B	P0C7U3	371 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	ATF6	P18850	670 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	HNRNPH1	P31943	449 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	SERPINB8	P50452	374 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	KPNA1	P52294	538 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	CSE1L	P55060	971 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	HTRA3	P83110	453 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	RING1	Q06587	406 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	USP41	Q3LFD5	358 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	FASTKD1	Q53R41	847 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	PPM1J	Q5JR12	505 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	PKN3	Q6P5Z2	889 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	CYB5D1	Q6P9G0	228 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	CMC1	Q7Z7K0	106 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	PPHLN1	Q8NEY8	458 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	PPP1R14C	Q8TAE6	165 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	NSMCE1	Q8WV22	266 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	AZIN2	Q96A70	460 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	PABPC5	Q96DU9	382 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	UBE2O	Q9C0C9	1292 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	NSMCE4A	Q9NXX6	385 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	SAGE1	Q9NXZ1	904 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	KLHL42	Q9P2K6	505 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	ZFP69B	Q9UJL9	534 aa		13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	MTO1	Q9Y2Z2	717 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-216	ENST00000444878	CHD5	Q8TDI0	1954 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878		J3KR12	359 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	ADAM12	O43184	909 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	PLIN3	O60664	434 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	F7	P08709	466 aa	Predicted RBP	13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	DLD	P09622	509 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	ADRA1A	P35348	466 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	ITK	Q08881	620 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	DBN1	Q16643	649 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	MARC1	Q5VT66	337 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	DENND5A	Q6IQ26	1287 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	POTEH	Q6S545	545 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	KDELC2	Q7Z4H8	507 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	MTDH	Q86UE4	582 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	MRGPRX2	Q96LB1	330 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	TMEM120A	Q9BXJ8	343 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	SLC25A51	Q9H1U9	297 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	ATXN3L	Q9H3M9	355 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	NT5M	Q9NPB1	228 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	EMCN	Q9ULC0	261 aa		13.89	□□□□□ -0.19
RBM39-216	ENST00000444878	PEX11B	O96011	259 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	NQO1	P15559	274 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	RPL17	P18621	184 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	OR1D2	P34982	312 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	OCRL	Q01968	901 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	STX3	Q13277	289 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	POLD3	Q15054	466 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	PCSK7	Q16549	785 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	TAF1B	Q53T94	588 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	SLC8B1	Q6J4K2	584 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	KIAA1841	Q6NSI8	718 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.88	□□□□□ -0.19	1e-8	■■■■□ 22
RBM39-216	ENST00000444878	ANKRD33	Q7Z3H0	272 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	CRLF3	Q8IUI8	442 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	CCDC117	Q8IWD4	279 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	FATE1	Q969F0	183 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	PSMG2	Q969U7	264 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	ISL2	Q96A47	359 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	KLHL5	Q96PQ7	755 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	KCNK13	Q9HB14	408 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	MTRR	Q9UBK8	725 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	HEY2	Q9UBP5	337 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	DRGX	A6NNA5	263 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	RAMP2	O60895	175 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	CCL5	P13501	91 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	TARS	P26639	723 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	OR1E1	P30953	314 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	MAGEA12	P43365	314 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	ABCG1	P45844	678 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	TUFM	P49411	452 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	WNT3A	P56704	352 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	KCNJ2	P63252	427 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	ZBTB16	Q05516	673 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	SLC10A7	Q0GE19	358 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	MTA1	Q13330	715 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	RANBP10	Q6VN20	620 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	SLC39A5	Q6ZMH5	540 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	ZCCHC23	Q6ZST2	131 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	ASRGL1	Q7L266	308 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	KIF2B	Q8N4N8	673 aa		13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	PTCD2	Q8WV60	388 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-216	ENST00000444878	VPS39	Q96JC1	886 aa		13.88	□□□□□ -0.19

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