RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 PIP4K2CQ8TBX8 421 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 HSPA12BQ96MM6 686 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 PARD6AQ9NPB6 346 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 ETNK2Q9NVF9 386 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 SERGEFQ9UGK8 458 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 SCML1Q9UN30 329 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 NUMA1Q14980 2115 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 ZSCAN5CA6NGD5 496 aaPredicted RBP19.01■□□□□ 0.63
SHH-204ENST00000441114 FAM47DPA6NHR8 397 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 C1QTNF3-AMACRE9PGA6 284 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 J3KR12 359 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 ZNF821O75541 412 aaPredicted RBP19.01■□□□□ 0.63
SHH-204ENST00000441114 ADH1BP00325 375 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 IGLV3-19P01714 112 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 C5AR1P21730 350 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 CHRNA3P32297 505 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 MPLP40238 635 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 SFSWAPQ12872 951 aaKnown RBP19.01■□□□□ 0.63
SHH-204ENST00000441114 TCEAL1Q15170 157 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 CARD16Q5EG05 197 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 TMCO3Q6UWJ1 677 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.01■□□□□ 0.63
SHH-204ENST00000441114 DPY19L3Q6ZPD9 716 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 SLC41A1Q8IVJ1 513 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 ARHGAP12Q8IWW6 846 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 RGL4Q8IZJ4 473 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 AADATQ8N5Z0 425 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 PCDH20Q8N6Y1 951 aaKnown RBP19.01■□□□□ 0.63
SHH-204ENST00000441114 GRIN3AQ8TCU5 1115 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 CEP44Q9C0F1 390 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 BTBD1Q9H0C5 482 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 NEUROG2Q9H2A3 272 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 REXO2Q9Y3B8 237 aaKnown RBP19.01■□□□□ 0.63
SHH-204ENST00000441114 SHROOM3Q8TF72 1996 aa19.01■□□□□ 0.63
SHH-204ENST00000441114 MYO15AQ9UKN7 3530 aa19■□□□□ 0.63
SHH-204ENST00000441114 BCLAF3A2AJT9 711 aaKnown RBP19■□□□□ 0.63
SHH-204ENST00000441114 RCCD1A6NED2 376 aa19■□□□□ 0.63
SHH-204ENST00000441114 MEI4A8MW99 385 aa19■□□□□ 0.63
SHH-204ENST00000441114 KPNA3O00505 521 aaPredicted RBP19■□□□□ 0.63
SHH-204ENST00000441114 ALOX15BO15296 676 aa19■□□□□ 0.63
SHH-204ENST00000441114 SPOPO43791 374 aa19■□□□□ 0.63
SHH-204ENST00000441114 BUB1BO60566 1050 aaPredicted RBP19■□□□□ 0.63
SHH-204ENST00000441114 TMCC1O94876 653 aa19■□□□□ 0.63
SHH-204ENST00000441114 CTSLP07711 333 aa19■□□□□ 0.63
SHH-204ENST00000441114 COMTP21964 271 aa19■□□□□ 0.63
SHH-204ENST00000441114 ITPKAP23677 461 aa19■□□□□ 0.63
SHH-204ENST00000441114 IL4RP24394 825 aa19■□□□□ 0.63
SHH-204ENST00000441114 MAOBP27338 520 aa19■□□□□ 0.63
SHH-204ENST00000441114 ARSEP51690 589 aa19■□□□□ 0.63
SHH-204ENST00000441114 NAP1L1P55209 391 aaKnown RBP19■□□□□ 0.63
SHH-204ENST00000441114 DPYSL3Q14195 570 aa19■□□□□ 0.63
SHH-204ENST00000441114 ARSIQ5FYB1 569 aa19■□□□□ 0.63
SHH-204ENST00000441114 FAM46CQ5VWP2 391 aa19■□□□□ 0.63
SHH-204ENST00000441114 ARHGAP36Q6ZRI8 547 aa19■□□□□ 0.63
SHH-204ENST00000441114 USP30Q70CQ3 517 aa19■□□□□ 0.63
SHH-204ENST00000441114 KIAA1328Q86T90 577 aa19■□□□□ 0.63
SHH-204ENST00000441114 OR6K2Q8NGY2 324 aa19■□□□□ 0.63
SHH-204ENST00000441114 TSC1Q92574 1164 aa19■□□□□ 0.63
SHH-204ENST00000441114 GOLPH3Q9H4A6 298 aa19■□□□□ 0.63
SHH-204ENST00000441114 ZDHHC6Q9H6R6 413 aa19■□□□□ 0.63
SHH-204ENST00000441114 GRPEL1Q9HAV7 217 aa19■□□□□ 0.63
SHH-204ENST00000441114 SEMA4GQ9NTN9 838 aa19■□□□□ 0.63
SHH-204ENST00000441114 UBA2Q9UBT2 640 aaPredicted RBP19■□□□□ 0.63
SHH-204ENST00000441114 IL36AQ9UHA7 158 aa19■□□□□ 0.63
SHH-204ENST00000441114 PPM1HQ9ULR3 514 aa19■□□□□ 0.63
SHH-204ENST00000441114 PCDHGA5Q9Y5G8 931 aa19■□□□□ 0.63
SHH-204ENST00000441114 GOLGA6L3A6NEY3 463 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 RNF103O00237 685 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 SEMA4FO95754 770 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 GKP32189 559 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 SLC1A1P43005 524 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 CCNHP51946 323 aaPredicted RBP18.99■□□□□ 0.63
SHH-204ENST00000441114 PDK2Q15119 407 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 SF3A2Q15428 464 aaKnown RBP18.99■□□□□ 0.63
SHH-204ENST00000441114 ANKRD20A8PQ5CZ79 823 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 SPDYCQ5MJ68 293 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 ATXN7L2Q5T6C5 722 aaPredicted RBP18.99■□□□□ 0.63
SHH-204ENST00000441114 DCAF12L1Q5VU92 463 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 AFMIDQ63HM1 303 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 MAP7D3Q8IWC1 876 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 LZTR1Q8N653 840 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 FAM71BQ8TC56 605 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 SNX19Q92543 992 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 RAPGEF5Q92565 580 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 ZNF419Q96HQ0 510 aaPredicted RBP18.99■□□□□ 0.63
SHH-204ENST00000441114 HEPHQ9BQS7 1158 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 DESI2Q9BSY9 194 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 C6orf106Q9H6K1 298 aaPredicted RBP18.99■□□□□ 0.63
SHH-204ENST00000441114 SP110Q9HB58 689 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 TMEM74BQ9NUR3 256 aa18.99■□□□□ 0.63
SHH-204ENST00000441114 HECAQ9UBI9 543 aaPredicted RBP18.99■□□□□ 0.63
SHH-204ENST00000441114 A0A0A6YYK5 440 aaPredicted RBP18.98■□□□□ 0.63
SHH-204ENST00000441114 CXorf51AA0A1B0GTR3 108 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 LRRD1A4D1F6 860 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 KRIT1O00522 736 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 PRAMEF11O60813 436 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 LEFTY1O75610 366 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 PRNPP04156 253 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 C7P10643 843 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 TGM1P22735 817 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms