RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 SLC47A2Q86VL8 602 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 TBCBQ99426 244 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 LGMNQ99538 433 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 SPON2Q9BUD6 331 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 TRIM62Q9BVG3 475 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 MAGEB5Q9BZ81 275 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 RAB6CQ9H0N0 254 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 TCEAL2Q9H3H9 227 aaPredicted RBP8.29□□□□□ -1.08
VIM-202ENST00000421459 GGT7Q9UJ14 662 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 CFAP46Q8IYW2 2715 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 GOLGA4Q13439 2230 aaKnown RBP8.29□□□□□ -1.08
VIM-202ENST00000421459 CABIN1Q9Y6J0 2220 aa8.29□□□□□ -1.08
VIM-202ENST00000421459 ACACAQ13085 2346 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 BICDL2A1A5D9 508 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 CPED1A4D0V7 1026 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 DRGXA6NNA5 263 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 TK2O00142 265 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 FOXN3O00409 490 aaPredicted RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 ALOX15BO15296 676 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 SPINT1O43278 529 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 HSF2BPO75031 334 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 DAB1O75553 588 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 HNRNPA2B1P22626 353 aaKnown RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 PON1P27169 355 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 NOS2P35228 1153 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 CXCR3P49682 368 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 SULT1E1P49888 294 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 OXCT1P55809 520 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 MARSP56192 900 aaKnown RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 KRT83P78385 493 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 CFHR1Q03591 330 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 PAK1Q13153 545 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 LY6DQ14210 128 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 CDKN3Q16667 212 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 DEFB133Q30KQ1 61 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 C5orf22Q49AR2 442 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 TMEM259Q4ZIN3 620 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 TRNP1Q6NT89 227 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 GUSBP11Q6P575 273 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 C22orf39Q6P5X5 142 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 FOXR1Q6PIV2 292 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 LEKR1Q6ZMV7 388 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 NYAP1Q6ZVC0 841 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 ERN2Q76MJ5 926 aaKnown RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 PTAR1Q7Z6K3 402 aaPredicted RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 ABI3BPQ7Z7G0 1075 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 IRF2BP1Q8IU81 584 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 CACTIN-AS1Q8N1I8 211 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 NETO2Q8NC67 525 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 TMIEQ8NEW7 156 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 OR6K2Q8NGY2 324 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 IFI44Q8TCB0 444 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 HIC2Q96JB3 615 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 NPY6RQ99463 290 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 SLC17A9Q9BYT1 436 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 WDCPQ9H6R7 721 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 SIX2Q9NPC8 291 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 ASNSD1Q9NWL6 643 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 ARHGEF38Q9NXL2 777 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 IL36AQ9UHA7 158 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 PNMA8BQ9ULN7 279 aaPredicted RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 TPX2Q9ULW0 747 aaKnown RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 PCDHGC3Q9UN70 934 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 HS3ST2Q9Y278 367 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 ITM2BQ9Y287 266 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 FCF1Q9Y324 198 aaKnown RBP8.28□□□□□ -1.08
VIM-202ENST00000421459 WASF2Q9Y6W5 498 aa8.28□□□□□ -1.08
VIM-202ENST00000421459 TEX51A0A1B0GUA7 166 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 IGLON5A6NGN9 336 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 SCAMP1O15126 338 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 KLK10O43240 276 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ZMPSTE24O75844 475 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 GNA14O95837 355 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 CD160O95971 181 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 GLI1P08151 1106 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ITIH2P19823 946 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 NUDT1P36639 197 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 DEUP1Q05D60 604 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 C1QBPQ07021 282 aaKnown RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 EIF2B5Q13144 721 aaKnown RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 C1orf61Q13536 156 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 TCEA2Q15560 299 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 MEA1Q16626 185 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 HS1BP3Q53T59 392 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 TAF1BQ53T94 588 aaPredicted RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 C3orf38Q5JPI3 329 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 LRRC73Q5JTD7 316 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 PERM1Q5SV97 790 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 TAF3Q5VWG9 929 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 NEK5Q6P3R8 708 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 SLC26A9Q7LBE3 791 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 PHLDB2Q86SQ0 1253 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 RBFAQ8N0V3 343 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ZNF248Q8NDW4 579 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ZNF548Q8NEK5 533 aaPredicted RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 MAPK15Q8TD08 544 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 LMX1AQ8TE12 382 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 SHC3Q92529 594 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 VOPP1Q96AW1 172 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ATXN7L3BQ96GX2 97 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms