RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 LPOP22079 712 aaPredicted RBP17.5■□□□□ 0.39
PHRF1-202ENST00000413872 RAD23AP54725 363 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 MTDHQ86UE4 582 aaKnown RBP17.5■□□□□ 0.39
PHRF1-202ENST00000413872 CDK20Q8IZL9 346 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 ACMSDQ8TDX5 336 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 ELMO1Q92556 727 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 INPP5DQ92835 1189 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 VPS45Q9NRW7 570 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 KRT84Q9NSB2 600 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 CENPAP49450 140 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 MPPE1Q53F39 396 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 AENQ8WTP8 325 aaKnown RBP17.5■□□□□ 0.39
PHRF1-202ENST00000413872 HAO1Q9UJM8 370 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 SHPRHQ149N8 1683 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 FKBP6O75344 327 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 TNFRSF8P28908 595 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 CDK18Q07002 472 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 ZNF844Q08AG5 666 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 DUSP4Q13115 394 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 SH3D19Q5HYK7 790 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 BBS4Q96RK4 519 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 TM6SF2Q9BZW4 377 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 RXFP1Q9HBX9 757 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 PSME2Q9UL46 239 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.5■□□□□ 0.393e-6■■■■□ 19.3
PHRF1-202ENST00000413872 LTBP3Q9NS15 1303 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 ANKDD1BA6NHY2 528 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 FSCN2O14926 492 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 MAN1A2O60476 641 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 PTPN4P29074 926 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 GNA13Q14344 377 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 INTS6LQ5JSJ4 861 aaKnown RBP17.5■□□□□ 0.39
PHRF1-202ENST00000413872 ZDHHC20Q5W0Z9 365 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 LLGL2Q6P1M3 1020 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 MIER2Q8N344 545 aa17.5■□□□□ 0.39
PHRF1-202ENST00000413872 NT5C1B-RDH14C9J2C7 533 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 NFKBIEO00221 500 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 NQO1P15559 274 aaKnown RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 MMP8P22894 467 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 CLK1P49759 484 aaKnown RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 CLK2P49760 499 aaKnown RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 RAET1GQ6H3X3 334 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 NPNTQ6UXI9 565 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 CACUL1Q86Y37 369 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 KCTD14Q9BQ13 255 aaPredicted RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 POMKQ9H5K3 350 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 EXOSC4Q9NPD3 245 aaKnown RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 ACTL7BQ9Y614 415 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 TMEM191CA6NGB0 347 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 EPHB6O15197 1021 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 LGR5O75473 907 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 IRF8Q02556 426 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 PLPP4Q5VZY2 271 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 CHMP1BQ7LBR1 199 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 FNIP1Q8TF40 1166 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 PIK3R5Q8WYR1 880 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 ACBD6Q9BR61 282 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 ENOPH1Q9UHY7 261 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 CROTQ9UKG9 612 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 LMO7Q8WWI1 1683 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 M0R3G1 203 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 ZNF682O95780 498 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 LRRC23Q53EV4 343 aaPredicted RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 TTC33Q6PID6 262 aaPredicted RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 CPA6Q8N4T0 437 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 SLIT2O94813 1529 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 GRM6O15303 877 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 C4BPAP04003 597 aaKnown RBP17.49■□□□□ 0.39
PHRF1-202ENST00000413872 TAF10Q12962 218 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 ZNF544Q6NX49 715 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 BTN2A2Q8WVV5 523 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 TIFAQ96CG3 184 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 ENTPD4Q9Y227 616 aa17.49■□□□□ 0.39
PHRF1-202ENST00000413872 SGTAO43765 313 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 IL1BP01584 269 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 INHAP05111 366 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 KELP23276 732 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 RPL7AP62424 266 aaKnown RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 TRMT5Q32P41 509 aaKnown RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 PARP15Q460N3 678 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 CAPRIN2Q6IMN6 1127 aaKnown RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 FAM126BQ8IXS8 530 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 CCT7Q99832 543 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 SLC25A23Q9BV35 468 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 SNX6Q9UNH7 406 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 SIGLEC1Q9BZZ2 1709 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 KCNA3P22001 575 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 ADRA1BP35368 520 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 PFKPQ01813 784 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 FASTKQ14296 549 aaKnown RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 CCDC85BQ15834 202 aaPredicted RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 DEPDC1Q5TB30 811 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 C2orf15Q8WU43 125 aaKnown RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 GAS2L1Q99501 681 aaPredicted RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 SLC40A1Q9NP59 571 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 ZNF214Q9UL59 606 aaPredicted RBP17.48■□□□□ 0.39
PHRF1-202ENST00000413872 C1orf232A0A0U1RR37 186 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 CCT8P50990 548 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 SLC16A1P53985 500 aa17.48■□□□□ 0.39
PHRF1-202ENST00000413872 MBTD1Q05BQ5 628 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms