RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 DNA2P51530 1060 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 ATXN3P54252 364 aaPredicted RBP15.12■□□□□ 0.01
LIMS4-201ENST00000413601 ADPRHP54922 357 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 TPI1P60174 286 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 CNTN1Q12860 1018 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 TRIM14Q14142 442 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 PPM1JQ5JR12 505 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 CCDC122Q5T0U0 273 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 LEKR1Q6ZMV7 388 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 CYP4V2Q6ZWL3 525 aaPredicted RBP15.12■□□□□ 0.01
LIMS4-201ENST00000413601 OR8K1Q8NGG5 319 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 OR2T34Q8NGX1 318 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 DNAJC7Q99615 494 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 CATSPERBQ9H7T0 1116 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 HPCAL4Q9UM19 191 aa15.12■□□□□ 0.01
LIMS4-201ENST00000413601 SHROOM3Q8TF72 1996 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 WASH4PA8MWX3 477 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 RNF103O00237 685 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 EEF2KO00418 725 aaKnown RBP15.11■□□□□ 0.01
LIMS4-201ENST00000413601 KDELR3O43731 214 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 CD27P26842 260 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 RECQLP46063 649 aaPredicted RBP15.11■□□□□ 0.01
LIMS4-201ENST00000413601 CSNK1EP49674 416 aaKnown RBP15.11■□□□□ 0.01
LIMS4-201ENST00000413601 GRIK2Q13002 908 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 ARSIQ5FYB1 569 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 DPY19L3Q6ZPD9 716 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 ZNF354CQ86Y25 554 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 MINDY1Q8N5J2 469 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 PCDH20Q8N6Y1 951 aaKnown RBP15.11■□□□□ 0.01
LIMS4-201ENST00000413601 TMIEQ8NEW7 156 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 GRIN3AQ8TCU5 1115 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 ARHGEF26Q96DR7 871 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 BTBD6Q96KE9 485 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 KCTD15Q96SI1 283 aaPredicted RBP15.11■□□□□ 0.01
LIMS4-201ENST00000413601 ORAI3Q9BRQ5 295 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 NUP85Q9BW27 656 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 CEP44Q9C0F1 390 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 KLC2Q9H0B6 622 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 TM9SF3Q9HD45 589 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 IL36AQ9UHA7 158 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 NENFQ9UMX5 172 aa15.11■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3DA0A087WVF3 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3IA0A087WXS9 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3EA0A087X179 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3KA0A087X1G2 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3FA6NER0 549 aaPredicted RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3LB9A6J9 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 RASA4BC9J798 803 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 KPNA3O00505 521 aaPredicted RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 FGF10O15520 208 aaPredicted RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 RASA4O43374 803 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 PRNPP04156 253 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 CYP1A2P05177 515 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TPM1P09493 284 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3HP0C7X1 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TCF4P15884 667 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 HTR7P34969 479 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 ADKP55263 362 aaKnown RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 GEMIN4P57678 1058 aaKnown RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 YBEYP58557 167 aaPredicted RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 FOXK2Q01167 660 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 BNC1Q01954 994 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 ACAP1Q15027 740 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 CARD16Q5EG05 197 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 PPP6R3Q5H9R7 873 aaPredicted RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 AGBL4Q5VU57 503 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3GQ6DHY5 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3CQ6IPX1 549 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TBC1D3Q8IZP1 549 aaPredicted RBP15.1■□□□□ 0.01
LIMS4-201ENST00000413601 UMODL1-AS1Q8N2C9 162 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 FAM131CQ96AQ9 280 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 ARRDC3Q96B67 414 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 HMCESQ96FZ2 354 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 NCAPGQ9BPX3 1015 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TM6SF2Q9BZW4 377 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 EBF2Q9HAK2 575 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 ANAPC7Q9UJX3 599 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 WASF2Q9Y6W5 498 aa15.1■□□□□ 0.01
LIMS4-201ENST00000413601 TRPM6Q9BX84 2022 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 CXorf51AA0A1B0GTR3 108 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 A0A1B0GVT2 93 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 A0A1W2PPC4 97 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 EIF3CLB5ME19 914 aaKnown RBP15.09■□□□□ 0.01
LIMS4-201ENST00000413601 C10orf142B7Z368 130 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 SLC7A4O43246 635 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 PLRG1O43660 514 aaKnown RBP15.09■□□□□ 0.01
LIMS4-201ENST00000413601 BUB1O43683 1085 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 OPHN1O60890 802 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 LEFTY1O75610 366 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 IL1R2P27930 398 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 PCK1P35558 622 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 CCR5P51681 352 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 AFF3P51826 1226 aaKnown RBP15.09■□□□□ 0.01
LIMS4-201ENST00000413601 CCNHP51946 323 aaPredicted RBP15.09■□□□□ 0.01
LIMS4-201ENST00000413601 PPP2CBP62714 309 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 PPP2CAP67775 309 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 SERINC3Q13530 473 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 PIGHQ14442 188 aaPredicted RBP15.09■□□□□ 0.01
LIMS4-201ENST00000413601 SLC18A3Q16572 532 aa15.09■□□□□ 0.01
LIMS4-201ENST00000413601 TSR1Q2NL82 804 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms