RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 PPP1R16AQ96I34 528 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 CSPG4P5Q96PW8 444 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 OMDQ99983 421 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 CALN1Q9BXU9 219 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 PCED1AQ9H1Q7 454 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 NOL6Q9H6R4 1146 aaKnown RBP11.12□□□□□ -0.63
CHMP3-205ENST00000409810 GRPEL1Q9HAV7 217 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 SP110Q9HB58 689 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 CD93Q9NPY3 652 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 DYRK4Q9NR20 520 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 FBXL12Q9NXK8 326 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 WSB2Q9NYS7 404 aaPredicted RBP11.12□□□□□ -0.63
CHMP3-205ENST00000409810 UBA2Q9UBT2 640 aaPredicted RBP11.12□□□□□ -0.63
CHMP3-205ENST00000409810 FZD4Q9ULV1 537 aa11.12□□□□□ -0.63
CHMP3-205ENST00000409810 FCF1Q9Y324 198 aaKnown RBP11.12□□□□□ -0.63
CHMP3-205ENST00000409810 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 BTNL10A8MVZ5 291 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 MEI4A8MW99 385 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 K7ERQ8 282 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 DFFAO00273 331 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 MID1O15344 667 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 SLC7A4O43246 635 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 SMAD6O43541 496 aaKnown RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 PSTPIP1O43586 416 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 TMCC1O94876 653 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 GSRP00390 522 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 AMPD1P23109 780 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 CHRNA3P32297 505 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 DNA2P51530 1060 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 TAS2R40P59535 323 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 RAD51Q06609 339 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 DPYSL3Q14195 570 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 RFTN1Q14699 578 aaPredicted RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 IFI16Q16666 785 aaKnown RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 INO80DQ53TQ3 878 aaPredicted RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 CARD16Q5EG05 197 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 WDR45BQ5MNZ6 344 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 LRRC38Q5VT99 294 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 C11orf63Q6NUN7 778 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 RAD9BQ6WBX8 426 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 RABEPKQ7Z6M1 372 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 FAM124AQ86V42 546 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 VSIG1Q86XK7 387 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 RHOT1Q8IXI2 618 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 TMEFF1Q8IYR6 380 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 HDDC3Q8N4P3 179 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 FRMD1Q8N878 549 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 TMIEQ8NEW7 156 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 CADM4Q8NFZ8 388 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 PIP4K2CQ8TBX8 421 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 TSC1Q92574 1164 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 ANP32BQ92688 251 aaKnown RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 CELF6Q96J87 481 aaKnown RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 FAM129BQ96TA1 746 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 GPR174Q9BXC1 333 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 SLC39A8Q9C0K1 460 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 DDX56Q9NY93 547 aaKnown RBP11.11□□□□□ -0.63
CHMP3-205ENST00000409810 IL36AQ9UHA7 158 aa11.11□□□□□ -0.63
CHMP3-205ENST00000409810 A0A1W2PP55 124 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 BCLAF3A2AJT9 711 aaKnown RBP11.1□□□□□ -0.63
CHMP3-205ENST00000409810 LRRD1A4D1F6 860 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 LRRC72A6NJI9 287 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ZNF487B1APH4 448 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 PJA2O43164 708 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 PRAMEF11O60813 436 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 RNASEH2AO75792 299 aaKnown RBP11.1□□□□□ -0.63
CHMP3-205ENST00000409810 SEMA4FO95754 770 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 IGSF6O95976 241 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 KRT1P04264 644 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 COMTP21964 271 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 HOXD12P35452 270 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 MPLP40238 635 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 PAPOLAP51003 745 aaKnown RBP11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ARSEP51690 589 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 RHOAP61586 193 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ZNF33AQ06730 810 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 IL10RBQ08334 325 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 SPEM2Q0P670 501 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 KIF5AQ12840 1032 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ANKRD20A8PQ5CZ79 823 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 TMCO4Q5TGY1 634 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 AFMIDQ63HM1 303 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 DPY19L3Q6ZPD9 716 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ARMCX6Q7L4S7 300 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 DAAM2Q86T65 1068 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 LRRC49Q8IUZ0 686 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 TMEM139Q8IV31 216 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 BBS5Q8N3I7 341 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 RYBPQ8N488 228 aaPredicted RBP11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ATPAF2Q8N5M1 289 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ACRBPQ8NEB7 543 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 OR2AP1Q8NGE2 309 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 OR2A12Q8NGT7 310 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.1□□□□□ -0.63
CHMP3-205ENST00000409810 NSMCE1Q8WV22 266 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 ZNF419Q96HQ0 510 aaPredicted RBP11.1□□□□□ -0.63
CHMP3-205ENST00000409810 LRIG1Q96JA1 1093 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 HSPA12BQ96MM6 686 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 GDAP1L1Q96MZ0 367 aa11.1□□□□□ -0.63
CHMP3-205ENST00000409810 HEPHQ9BQS7 1158 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms