RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 FBXO28Q9NVF7 368 aa4.84□□□□□ -1.63
CLK1-203ENST00000409769 C9orf78Q9NZ63 289 aaPredicted RBP4.84□□□□□ -1.63
CLK1-203ENST00000409769 LRRFIP2Q9Y608 721 aaKnown RBP4.84□□□□□ -1.63
CLK1-203ENST00000409769 TAF1P21675 1872 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 KIF13BQ9NQT8 1826 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 COL4A1P02462 1669 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 RIC1Q4ADV7 1423 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A8PA6NJQ4 464 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 C16orf96A6NNT2 1141 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 LGALS16A8MUM7 142 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 PRYO14603 147 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 NKX2-8O15522 239 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 TLR2O60603 784 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 CNOT3O75175 753 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 USP12O75317 370 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A13PP0C7W8 464 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A24PP0C7X0 464 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 IGFBP2P18065 325 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 GPTP24298 496 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 YY1P25490 414 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 NDUFS1P28331 727 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 TACR3P29371 465 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 TM4SF1P30408 202 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 RFC4P35249 363 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 SERPINF1P36955 418 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 RFX5P48382 616 aaPredicted RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 ZNF84P51523 738 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 KRTAP10-7P60409 375 aaPredicted RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 RPS13P62277 151 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 CBFBQ13951 182 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 PFKFB4Q16877 469 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 GLE1Q53GS7 698 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 AWAT1Q58HT5 328 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 KIAA1161Q6NSJ0 714 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 C1orf228Q6PIY5 440 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 KYAT3Q6YP21 454 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 CENPQQ7L2Z9 268 aaPredicted RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 PPP1R42Q7Z4L9 355 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 PIM3Q86V86 326 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 MYLK4Q86YV6 388 aaPredicted RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 MPLKIPQ8TAP9 179 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 SLC22A17Q8WUG5 538 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 MPHOSPH6Q99547 160 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 UTP14AQ9BVJ6 771 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 FOXP1Q9H334 677 aaPredicted RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 BICC1Q9H694 974 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 DCTPP1Q9H773 170 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 AGO4Q9HCK5 861 aaKnown RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 MAGED2Q9UNF1 606 aaPredicted RBP4.83□□□□□ -1.64
CLK1-203ENST00000409769 NIP7Q9Y221 180 aaKnown RBP eCLIP4.83□□□□□ -1.64
CLK1-203ENST00000409769 DAAM1Q9Y4D1 1078 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 PCDHB2Q9Y5E7 798 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 SPEF2Q9C093 1822 aa4.83□□□□□ -1.64
CLK1-203ENST00000409769 CARMIL3Q8ND23 1372 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 ABCC12Q96J65 1359 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 SH3TC1Q8TE82 1336 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.82□□□□□ -1.64
CLK1-203ENST00000409769 CD8B2A6NJW9 211 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 AQP12BA6NM10 295 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 ADAM10O14672 748 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 ASNA1O43681 348 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 CYP3A4P08684 503 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 ALADP13716 330 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 KRTAP10-6P60371 365 aaPredicted RBP4.82□□□□□ -1.64
CLK1-203ENST00000409769 TLE3Q04726 772 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 OS9Q13438 667 aaPredicted RBP4.82□□□□□ -1.64
CLK1-203ENST00000409769 GAB1Q13480 694 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 SLC10A5Q5PT55 438 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 TANGO2Q6ICL3 276 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 LVRNQ6Q4G3 990 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 C16orf89Q6UX73 402 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 C9orf47Q6ZRZ4 202 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 RINLQ6ZS11 566 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 ANKRD13BQ86YJ7 626 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 C16orf71Q8IYS4 520 aaPredicted RBP4.82□□□□□ -1.64
CLK1-203ENST00000409769 ADAMTS15Q8TE58 950 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 STYXQ8WUJ0 223 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 GCC1Q96CN9 775 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 RMDN3Q96TC7 470 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 RWDD1Q9H446 243 aaPredicted RBP4.82□□□□□ -1.64
CLK1-203ENST00000409769 ERVK-5Q9HDB9 667 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 HERC5Q9UII4 1024 aaKnown RBP4.82□□□□□ -1.64
CLK1-203ENST00000409769 PCDHB7Q9Y5E2 793 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 COMMD10Q9Y6G5 202 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 DLEC1Q9Y238 1755 aa4.82□□□□□ -1.64
CLK1-203ENST00000409769 RTL9Q8NET4 1388 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 KIAA1551Q9HCM1 1747 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A18PA6NE21 464 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A16PA6NEW6 464 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A9PA6NNJ1 464 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A5PA8MXJ8 464 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 RRHO14718 337 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 DNPH1O43598 174 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 HMMRO75330 724 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 LARGE1O95461 756 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 CER1O95813 267 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 CSTBP04080 98 aaKnown RBP4.81□□□□□ -1.64
CLK1-203ENST00000409769 SLC3A2P08195 630 aaKnown RBP4.81□□□□□ -1.64
CLK1-203ENST00000409769 ITGA2BP08514 1039 aa4.81□□□□□ -1.64
CLK1-203ENST00000409769 FAM90A15PP0C7V4 464 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms