RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 GLIS1Q8NBF1 620 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 PCDH19Q8TAB3 1148 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 UHMK1Q8TAS1 419 aaKnown RBP13.71□□□□□ -0.22
LIMS1-204ENST00000409441 DNASE1L2Q92874 299 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 HAUS1Q96CS2 278 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 RNF157Q96PX1 679 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 XPO6Q96QU8 1125 aaKnown RBP13.71□□□□□ -0.22
LIMS1-204ENST00000409441 TMEM121Q9BTD3 319 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 CCDC134Q9H6E4 229 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 RETREG1Q9H6L5 497 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 PPCSQ9HAB8 311 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 ARHGEF4Q9NR80 690 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 PLSCR2Q9NRY7 297 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 DUSP12Q9UNI6 340 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 TCF20Q9UGU0 1960 aaKnown RBP13.71□□□□□ -0.22
LIMS1-204ENST00000409441 A0A087WUV0 522 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-204ENST00000409441 WASH4PA8MWX3 477 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 CDH16O75309 829 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 LUC7L3O95232 432 aaKnown RBP13.7□□□□□ -0.22
LIMS1-204ENST00000409441 ZSCAN5DPP0CG00 497 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 OR1E1P30953 314 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 SLC6A11P48066 632 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 SOX9P48436 509 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 EIF3EP60228 445 aaKnown RBP13.7□□□□□ -0.22
LIMS1-204ENST00000409441 DYNLT1P63172 113 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 LONRF1Q17RB8 773 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 SLC44A4Q53GD3 710 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 FSCBQ5H9T9 825 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 RNF43Q68DV7 783 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 CENPUQ71F23 418 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 MFN1Q8IWA4 741 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 CCDC117Q8IWD4 279 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-204ENST00000409441 PPIL6Q8IXY8 311 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 RTL3Q8N8U3 475 aaKnown RBP13.7□□□□□ -0.22
LIMS1-204ENST00000409441 FIBINQ8TAL6 211 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 FAF2Q96CS3 445 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 DCBLD2Q96PD2 775 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 SELENOSQ9BQE4 189 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 SLC2A11Q9BYW1 496 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 PPANQ9NQ55 473 aaKnown RBP13.7□□□□□ -0.22
LIMS1-204ENST00000409441 HEBP1Q9NRV9 189 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 NDFIP2Q9NV92 336 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 TMEM248Q9NWD8 314 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 ZNF212Q9UDV6 495 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 FBXO10Q9UK96 956 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 TBC1D30Q9Y2I9 924 aa13.7□□□□□ -0.22
LIMS1-204ENST00000409441 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-204ENST00000409441 C5orf60A6NFR6 353 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 ALOX15BO15296 676 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 CACNG3O60359 315 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 TULP3O75386 442 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 ETS1P14921 441 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 CHN1P15882 459 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 PECAM1P16284 738 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-204ENST00000409441 TGM2P21980 687 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 STIP1P31948 543 aaKnown RBP13.69□□□□□ -0.22
LIMS1-204ENST00000409441 SLCO1A2P46721 670 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 CDH18Q13634 790 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 NOMO1Q15155 1222 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 IER5LQ5T953 404 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 PRUNE1Q86TP1 453 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 C12orf40Q86WS4 652 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 TDRPQ86YL5 185 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 ETFBKMTQ8IXQ9 262 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 PQLC3Q8N755 202 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 PRCCQ92733 491 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-204ENST00000409441 SAYSD1Q9NPB0 183 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 ETNK2Q9NVF9 386 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 DNAJC17Q9NVM6 304 aaKnown RBP13.69□□□□□ -0.22
LIMS1-204ENST00000409441 DONSONQ9NYP3 566 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 DEC1Q9P2X7 70 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 ACTL7BQ9Y614 415 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 PIAS3Q9Y6X2 628 aa13.69□□□□□ -0.22
LIMS1-204ENST00000409441 CFAP69A5D8W1 941 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 SPECC1L-ADORA2AF8WAN1 911 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 DCLK1O15075 740 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 TRIM24O15164 1050 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 IFNB1P01574 187 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 CISD3P0C7P0 127 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 GLULP15104 373 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 TSHRP16473 764 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 OPRD1P41143 372 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 SEC24CP53992 1094 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 ASTLQ6HA08 431 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 SETD3Q86TU7 594 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 EXOC3L1Q86VI1 746 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 RALGPS2Q86X27 583 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 UBALD2Q8IYN6 164 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 WFDC5Q8TCV5 224 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 ARHGEF2Q92974 986 aaKnown RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 CHFRQ96EP1 664 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 C9orf72Q96LT7 481 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 C8orf33Q9H7E9 229 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 INTS9Q9NV88 658 aaKnown RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 KIAA1522Q9P206 1035 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-204ENST00000409441 MUTYHQ9UIF7 546 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 MFHAS1Q9Y4C4 1052 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 RBP3P10745 1247 aa13.68□□□□□ -0.22
LIMS1-204ENST00000409441 HLA-FP30511 346 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms