RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GLULP15104 373 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 STK19P49842 368 aaPredicted RBP18.39■□□□□ 0.54
SDC1-203ENST00000403076 ST8SIA6P61647 398 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 TUBB4BP68371 445 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 EIF4HQ15056 248 aaKnown RBP18.39■□□□□ 0.54
SDC1-203ENST00000403076 PON2Q15165 354 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 P3H1Q32P28 736 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 ACCSLQ4AC99 568 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 GLE1Q53GS7 698 aaKnown RBP18.39■□□□□ 0.54
SDC1-203ENST00000403076 INO80DQ53TQ3 878 aaPredicted RBP18.39■□□□□ 0.54
SDC1-203ENST00000403076 RNF135Q8IUD6 432 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 ZNF567Q8N184 647 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 PHTF2Q8N3S3 785 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 TAB3Q8N5C8 712 aaPredicted RBP18.39■□□□□ 0.54
SDC1-203ENST00000403076 GLIS1Q8NBF1 620 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 CYB5D2Q8WUJ1 264 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 CASKIN2Q8WXE0 1202 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 SORCS1Q8WY21 1168 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 RTP4Q96DX8 246 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 IL12RB2Q99665 862 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 TRIM51Q9BSJ1 452 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 PCDH9Q9HC56 1237 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 PAK5Q9P286 719 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 PLA2G4CQ9UP65 541 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 EFCAB8A8MWE9 144 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 OPHN1O60890 802 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 TMCC1O94876 653 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 DLDP09622 509 aaKnown RBP18.39■□□□□ 0.53
SDC1-203ENST00000403076 RHOXF2BP0C7M4 288 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 SERPINH1P50454 418 aaKnown RBP18.39■□□□□ 0.53
SDC1-203ENST00000403076 SLC7A5Q01650 507 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 ITPRIPL1Q6GPH6 555 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 TXNDC11Q6PKC3 985 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 METTL3Q86U44 580 aaKnown RBP18.39■□□□□ 0.53
SDC1-203ENST00000403076 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.39■□□□□ 0.53
SDC1-203ENST00000403076 CCHCR1Q8TD31 782 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 MSANTD3Q96H12 275 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 TEKT5Q96M29 485 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 RHOXF2Q9BQY4 288 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 TRIM31Q9BZY9 425 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 FBRSL1Q9HCM7 1045 aaKnown RBP18.39■□□□□ 0.53
SDC1-203ENST00000403076 FBXL21Q9UKT6 434 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 SLC8A2Q9UPR5 921 aa18.39■□□□□ 0.53
SDC1-203ENST00000403076 FCF1Q9Y324 198 aaKnown RBP18.39■□□□□ 0.53
SDC1-203ENST00000403076 UTP11Q9Y3A2 253 aaKnown RBP18.39■□□□□ 0.53
SDC1-203ENST00000403076 K7ERQ8 282 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 ZBTB24O43167 697 aaPredicted RBP18.38■□□□□ 0.53
SDC1-203ENST00000403076 RPL22P35268 128 aaKnown RBP18.38■□□□□ 0.53
SDC1-203ENST00000403076 ADCY8P40145 1251 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 RHOAP61586 193 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 GRSF1Q12849 480 aaKnown RBP eCLIP18.38■□□□□ 0.53
SDC1-203ENST00000403076 GPS1Q13098 491 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 PTK6Q13882 451 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 CYTH1Q15438 398 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 IER5LQ5T953 404 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 TPRG1Q6ZUI0 275 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 TEX26Q8N6G2 289 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 UBXN4Q92575 508 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 RAB17Q9H0T7 212 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 RSPH14Q9UHP6 348 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 SLCO3A1Q9UIG8 710 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 CA14Q9ULX7 337 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 HS3ST2Q9Y278 367 aa18.38■□□□□ 0.53
SDC1-203ENST00000403076 COL4A3Q01955 1670 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 TCF20Q9UGU0 1960 aaKnown RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 CXorf51AA0A1B0GTR3 108 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 F5H423 210 aaPredicted RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 SMAD6O43541 496 aaKnown RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 HEXIM1O94992 359 aaKnown RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 CD160O95971 181 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 HLA-DQB2P05538 268 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 SRPRAP08240 638 aaKnown RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 SRCP12931 536 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 TERF1P54274 439 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 MLF2Q15773 248 aaPredicted RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 FNDC3BQ53EP0 1204 aaKnown RBP18.37■□□□□ 0.53
SDC1-203ENST00000403076 C4orf22Q6V702 233 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 SFTPA1Q8IWL2 248 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 GJD3Q8N144 294 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 SH2D3CQ8N5H7 860 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 CNTD1Q8N815 330 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 FAM3CQ92520 227 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 LRRC45Q96CN5 670 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 HINFPQ9BQA5 517 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 ERP44Q9BS26 406 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 GLOD4Q9HC38 313 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 NEU2Q9Y3R4 380 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 MIA3Q5JRA6 1907 aa18.37■□□□□ 0.53
SDC1-203ENST00000403076 MAN2B1O00754 1011 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 NFKB1P19838 968 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 HSPA9P38646 679 aaKnown RBP18.36■□□□□ 0.53
SDC1-203ENST00000403076 TNFRSF4P43489 277 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 MAXP61244 160 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 E2F5Q15329 346 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 DLG2Q15700 870 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 TSEN2Q8NCE0 465 aaKnown RBP18.36■□□□□ 0.53
SDC1-203ENST00000403076 PSKH2Q96QS6 385 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 POLR1EQ9GZS1 481 aaKnown RBP18.36■□□□□ 0.53
SDC1-203ENST00000403076 DPH5Q9H2P9 285 aa18.36■□□□□ 0.53
SDC1-203ENST00000403076 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.36■□□□□ 0.537e-7■□□□□ 9.8
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms