RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DCAF15Q66K64 600 aa21.31■■□□□ 1
CTCF-202ENST00000401394 CENPLQ8N0S6 344 aaPredicted RBP21.31■■□□□ 1
CTCF-202ENST00000401394 CHST13Q8NET6 341 aa21.31■■□□□ 1
CTCF-202ENST00000401394 FAM49AQ9H0Q0 323 aaPredicted RBP21.31■■□□□ 1
CTCF-202ENST00000401394 ASB7Q9H672 318 aa21.31■■□□□ 1
CTCF-202ENST00000401394 NOL11Q9H8H0 719 aaKnown RBP21.31■■□□□ 1
CTCF-202ENST00000401394 IL1RL2Q9HB29 575 aa21.31■■□□□ 1
CTCF-202ENST00000401394 SLC2A6Q9UGQ3 507 aa21.31■■□□□ 1
CTCF-202ENST00000401394 ZNF112Q9UJU3 913 aa21.31■■□□□ 1
CTCF-202ENST00000401394 MT-CYBP00156 380 aaPredicted RBP21.31■■□□□ 1
CTCF-202ENST00000401394 ATP5BP06576 529 aaKnown RBP21.31■■□□□ 1
CTCF-202ENST00000401394 MYL4P12829 197 aa21.31■■□□□ 1
CTCF-202ENST00000401394 ERCC2P18074 760 aa21.31■■□□□ 1
CTCF-202ENST00000401394 KCNA5P22460 613 aa21.31■■□□□ 1
CTCF-202ENST00000401394 PPARGP37231 505 aaPredicted RBP21.31■■□□□ 1
CTCF-202ENST00000401394 NDST2P52849 883 aa21.31■■□□□ 1
CTCF-202ENST00000401394 ZNF280AP59817 542 aaPredicted RBP21.31■■□□□ 1
CTCF-202ENST00000401394 INSCQ1MX18 579 aa21.31■■□□□ 1
CTCF-202ENST00000401394 SH2D4BQ5SQS7 431 aa21.31■■□□□ 1
CTCF-202ENST00000401394 ARHGAP36Q6ZRI8 547 aa21.31■■□□□ 1
CTCF-202ENST00000401394 SLC26A9Q7LBE3 791 aa21.31■■□□□ 1
CTCF-202ENST00000401394 GAB3Q8WWW8 586 aa21.31■■□□□ 1
CTCF-202ENST00000401394 CCDC28BQ9BUN5 200 aa21.31■■□□□ 1
CTCF-202ENST00000401394 NXF3Q9H4D5 531 aaKnown RBP21.31■■□□□ 1
CTCF-202ENST00000401394 GIMAP2Q9UG22 337 aa21.31■■□□□ 1
CTCF-202ENST00000401394 PRSS51A0A1B0GVH4 220 aa21.3■■□□□ 1
CTCF-202ENST00000401394 C19orf81C9J6K1 198 aa21.3■■□□□ 1
CTCF-202ENST00000401394 NFKBIEO00221 500 aa21.3■■□□□ 1
CTCF-202ENST00000401394 AHSGP02765 367 aa21.3■■□□□ 1
CTCF-202ENST00000401394 MLNP12872 115 aa21.3■■□□□ 1
CTCF-202ENST00000401394 CDH2P19022 906 aaPredicted RBP21.3■■□□□ 1
CTCF-202ENST00000401394 PTPN9P43378 593 aa21.3■■□□□ 1
CTCF-202ENST00000401394 EMP3P54852 163 aa21.3■■□□□ 1
CTCF-202ENST00000401394 POU6F1Q14863 301 aa21.3■■□□□ 1
CTCF-202ENST00000401394 CNSTQ6PJW8 725 aa21.3■■□□□ 1
CTCF-202ENST00000401394 POTEAQ6S8J7 498 aa21.3■■□□□ 1
CTCF-202ENST00000401394 CYS1Q717R9 158 aa21.3■■□□□ 1
CTCF-202ENST00000401394 C1QTNF1Q9BXJ1 281 aa21.3■■□□□ 1
CTCF-202ENST00000401394 GTSE1Q9NYZ3 720 aa21.3■■□□□ 1
CTCF-202ENST00000401394 TPST1O60507 370 aa21.3■■□□□ 1
CTCF-202ENST00000401394 SEC24DO94855 1032 aaPredicted RBP21.3■■□□□ 1
CTCF-202ENST00000401394 SLC35E2BP0CK96 405 aa21.3■■□□□ 1
CTCF-202ENST00000401394 MAGEA12P43365 314 aa21.3■■□□□ 1
CTCF-202ENST00000401394 XIAPP98170 497 aa21.3■■□□□ 1
CTCF-202ENST00000401394 NSUN2Q08J23 767 aaKnown RBP eCLIP21.3■■□□□ 1
CTCF-202ENST00000401394 VGLL4Q14135 290 aa21.3■■□□□ 1
CTCF-202ENST00000401394 PTK2BQ14289 1009 aa21.3■■□□□ 1
CTCF-202ENST00000401394 NOMO2Q5JPE7 1267 aa21.3■■□□□ 1
CTCF-202ENST00000401394 DCUN1D5Q9BTE7 237 aa21.3■■□□□ 1
CTCF-202ENST00000401394 TRPV6Q9H1D0 765 aa21.3■■□□□ 1
CTCF-202ENST00000401394 FBRSL1Q9HCM7 1045 aaKnown RBP21.3■■□□□ 1
CTCF-202ENST00000401394 RGS17Q9UGC6 210 aaPredicted RBP21.3■■□□□ 1
CTCF-202ENST00000401394 EEF2KO00418 725 aaKnown RBP21.3■■□□□ 1
CTCF-202ENST00000401394 TNFAIP8O95379 198 aa21.3■■□□□ 1
CTCF-202ENST00000401394 PGK1P00558 417 aa21.3■■□□□ 1
CTCF-202ENST00000401394 CTBSQ01459 385 aa21.3■■□□□ 1
CTCF-202ENST00000401394 SLCO4A1Q96BD0 722 aa21.3■■□□□ 1
CTCF-202ENST00000401394 ZNF419Q96HQ0 510 aaPredicted RBP21.3■■□□□ 1
CTCF-202ENST00000401394 RNF39Q9H2S5 420 aa21.3■■□□□ 1
CTCF-202ENST00000401394 LRRC40Q9H9A6 602 aa21.3■■□□□ 1
CTCF-202ENST00000401394 PSME4Q14997 1843 aa21.29■■□□□ 1
CTCF-202ENST00000401394 PRORSD1PA6NEY8 169 aa21.29■■□□□ 1
CTCF-202ENST00000401394 TIPRLO75663 272 aa21.29■■□□□ 1
CTCF-202ENST00000401394 ANKDD1AQ495B1 522 aa21.29■■□□□ 1
CTCF-202ENST00000401394 C16orf89Q6UX73 402 aa21.29■■□□□ 1
CTCF-202ENST00000401394 TMEM135Q86UB9 458 aa21.29■■□□□ 1
CTCF-202ENST00000401394 CCT7Q99832 543 aa21.29■■□□□ 1
CTCF-202ENST00000401394 OSBPL2Q9H1P3 480 aa21.29■■□□□ 1
CTCF-202ENST00000401394 PRDM16Q9HAZ2 1276 aa21.29■■□□□ 1
CTCF-202ENST00000401394 ZBTB26Q9HCK0 441 aa21.29■■□□□ 1
CTCF-202ENST00000401394 TRPC7Q9HCX4 862 aa21.29■■□□□ 1
CTCF-202ENST00000401394 BFARQ9NZS9 450 aa21.29■■□□□ 1
CTCF-202ENST00000401394 RAP2CQ9Y3L5 183 aa21.29■■□□□ 1
CTCF-202ENST00000401394 SHROOM3Q8TF72 1996 aa21.29■■□□□ 1
CTCF-202ENST00000401394 PDLIM1O00151 329 aa21.29■■□□□ 1
CTCF-202ENST00000401394 TMCC1O94876 653 aa21.29■■□□□ 1
CTCF-202ENST00000401394 JCHAINP01591 159 aa21.29■■□□□ 1
CTCF-202ENST00000401394 ZFXP17010 805 aaPredicted RBP21.29■■□□□ 1
CTCF-202ENST00000401394 MAPK10P53779 464 aa21.29■■□□□ 1
CTCF-202ENST00000401394 APOFQ13790 326 aa21.29■■□□□ 1
CTCF-202ENST00000401394 RP9Q8TA86 221 aaKnown RBP21.29■■□□□ 1
CTCF-202ENST00000401394 SLC7A14Q8TBB6 771 aa21.29■■□□□ 1
CTCF-202ENST00000401394 DRC3Q9H069 523 aa21.29■■□□□ 1
CTCF-202ENST00000401394 CDYLQ9Y232 598 aa21.29■■□□□ 1
CTCF-202ENST00000401394 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.29■■□□□ 1
CTCF-202ENST00000401394 TRMUO75648 421 aaKnown RBP21.28■■□□□ 1
CTCF-202ENST00000401394 PDAP1Q13442 181 aaKnown RBP21.28■■□□□ 1
CTCF-202ENST00000401394 SPANXN3Q5MJ09 141 aa21.28■■□□□ 1
CTCF-202ENST00000401394 LCA5Q86VQ0 697 aa21.28■■□□□ 1
CTCF-202ENST00000401394 SH3RF2Q8TEC5 729 aa21.28■■□□□ 1
CTCF-202ENST00000401394 EDEM1Q92611 657 aa21.28■■□□□ 1
CTCF-202ENST00000401394 SERPINI1Q99574 410 aa21.28■■□□□ 1
CTCF-202ENST00000401394 VPS33BQ9H267 617 aa21.28■■□□□ 1
CTCF-202ENST00000401394 RAB26Q9ULW5 256 aa21.28■■□□□ 1
CTCF-202ENST00000401394 PTGDR2Q9Y5Y4 395 aa21.28■■□□□ 1
CTCF-202ENST00000401394 GNL1P36915 607 aaPredicted RBP21.28■■□□□ 1
CTCF-202ENST00000401394 C1QTNF8P60827 252 aa21.28■■□□□ 1
CTCF-202ENST00000401394 POU5F1BQ06416 359 aa21.28■■□□□ 1
CTCF-202ENST00000401394 LAMC2Q13753 1193 aa21.28■■□□□ 1
CTCF-202ENST00000401394 ZNF789Q5FWF6 425 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms