RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NAA20P61599 178 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC25A3Q00325 362 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 MAMLD1Q13495 774 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ACAP2Q15057 778 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 OCLNQ16625 522 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 NRF1Q16656 503 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM187BQ17R55 369 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PAN2Q504Q3 1202 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 CDC73Q6P1J9 531 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 FOXR2Q6PJQ5 311 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PLEKHH3Q7Z736 793 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 GIPC3Q8TF64 312 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 CENPIQ92674 756 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 EZH1Q92800 747 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PTCD3Q96EY7 689 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 TEKT5Q96M29 485 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 HGH1Q9BTY7 390 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 CDH9Q9ULB4 789 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 INVSQ9Y283 1065 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 GJB6O95452 261 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ITGAVP06756 1048 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ANPEPP15144 967 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 DSG3P32926 999 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 CDH8P55286 799 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 STARD3Q14849 445 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ALFQ53S48 1182 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SWT1Q5T5J6 900 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 AAGABQ6PD74 315 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM71AQ8IYT1 594 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 AADATQ8N5Z0 425 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 LNX1Q8TBB1 728 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 RFT1Q96AA3 541 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 INPP4AQ96PE3 977 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PANX3Q96QZ0 392 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ACSS3Q9H6R3 686 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 TAS2R14Q9NYV8 317 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 GTF2A1LQ9UNN4 478 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 RGSL1A5PLK6 1076 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TRIM38O00635 465 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 AREL1O15033 823 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 LTA4HP09960 611 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ATP5F1P24539 256 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RPL22P35268 128 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SUZ12Q15022 739 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PHKG1Q16816 387 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PCID2Q5JVF3 399 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 BROXQ5VW32 411 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 AADACL2Q6P093 401 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 STK40Q8N2I9 435 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TMEM159Q96B96 161 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TPD52L3Q96J77 140 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 NUAK2Q9H093 628 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 EPB41L4BQ9H329 900 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ATP13A1Q9HD20 1204 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF624Q9P2J8 865 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 VAV3Q9UKW4 847 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 WDR37Q9Y2I8 494 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PPRC1Q5VV67 1664 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TTLL13PA6NNM8 815 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 H3BN98 237 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 DYRK3O43781 588 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 WFS1O76024 890 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SNRPB2P08579 225 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ERVK-10P10266 1014 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 POLR2EP19388 210 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 BMP6P22004 513 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 GPR15P49685 360 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 AMPD2Q01433 879 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TAF5Q15542 800 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TFAP2DQ7Z6R9 452 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM83AQ86UY5 434 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 GPSM1Q86YR5 675 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 REPS1Q96D71 796 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 DGCR6LQ9BY27 220 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 POPDC2Q9HBU9 364 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TMEM216Q9P0N5 145 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF222Q9UK12 451 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PCDHB5Q9Y5E4 795 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PCDHA11Q9Y5I1 949 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ATXN2Q99700 1313 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 A0A0U1RQJ8 604 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 LACTBL1A8MY62 500 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ANKRD63C9JTQ0 380 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 H3BMM5 538 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ENTPD5O75356 428 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 CNPP09543 421 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 OR1E1P30953 314 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 IFNGR2P38484 337 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RAB27AP51159 221 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 OAZ1P54368 228 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PSME3P61289 254 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TNK2Q07912 1038 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 EGFL6Q8IUX8 553 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC9A9Q8IVB4 645 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC2A14Q8TDB8 520 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 KCTD4Q8WVF5 259 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 KAT5Q92993 513 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 CERS2Q96G23 380 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 EHD1Q9H4M9 534 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 OPTCQ9UBM4 332 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms