RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GRID2O43424 1007 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 DDNO94850 711 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 LCKP06239 509 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 FCGR2AP12318 317 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 UNGP13051 313 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 PKMP14618 531 aaKnown RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF12P17014 697 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 HOXD3P31249 432 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 AVPR1AP37288 418 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ZP1P60852 638 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 BIRC3Q13489 604 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 PTK2BQ14289 1009 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TRIM60Q495X7 471 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 FAM76BQ5HYJ3 339 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TRIM74Q86UV6 250 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TRIM73Q86UV7 250 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 IGFN1Q86VF2 1251 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 FJX1Q86VR8 437 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF354CQ86Y25 554 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 CAMK1DQ8IU85 385 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 SMAP1Q8IYB5 467 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TRIM63Q969Q1 353 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ARRDC3Q96B67 414 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TBC1D20Q96BZ9 403 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 LTV1Q96GA3 475 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 RTKNQ9BST9 563 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 PAGR1Q9BTK6 254 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 KATNAL1Q9BW62 490 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TM6SF1Q9BZW5 370 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 LHPPQ9H008 270 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 C6orf106Q9H6K1 298 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ELAC1Q9H777 363 aaKnown RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 RNF146Q9NTX7 359 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 KCND3Q9UK17 655 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 NFU1Q9UMS0 254 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 DGKBQ9Y6T7 804 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 SCN5AQ14524 2016 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ACTL6BO94805 426 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 CAMTA2O94983 1202 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 HOXB9P17482 250 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 AVPR2P30518 371 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SERPINF1P36955 418 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 RPL36AP83881 106 aaKnown RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 EEF1A2Q05639 463 aaKnown RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 RPS6KA2Q15349 733 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SHBQ15464 509 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 TIGD6Q17RP2 521 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 FSCBQ5H9T9 825 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 PDXDC1Q6P996 788 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 C16orf82Q7Z2V1 217 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF329Q86UD4 541 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 CUZD1Q86UP6 607 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ENDOVQ8N8Q3 282 aaKnown RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ZBTB8BQ8NAP8 495 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 DNASE2BQ8WZ79 361 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ABHD16BQ9H3Z7 469 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 KLHL31Q9H511 634 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ITM2CQ9NQX7 267 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 TXLNGQ9NUQ3 528 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 GPR52Q9Y2T5 361 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 TARSL2A2RTX5 802 aaKnown RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 EME2A4GXA9 379 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 LINC01553A4QN01 128 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 MS4A18H0YCH9 400 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SYT5O00445 386 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 TMCC1O94876 653 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF432O94892 652 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 CLDN7O95471 211 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 PRSS2P07478 247 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 VEGFAP15692 232 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ART1P52961 327 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 BNC1Q01954 994 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 PRKG1Q13976 671 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 POSTNQ15063 836 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 TAF5Q15542 800 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 PLK5Q496M5 336 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 C5orf22Q49AR2 442 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 GXYLT1Q4G148 440 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 C9orf57Q5W0N0 161 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ATG9BQ674R7 924 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SULT6B1Q6IMI4 303 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 JMJD6Q6NYC1 403 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SCN4BQ8IWT1 228 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SUGP1Q8IWZ8 645 aaKnown RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 TRAPPC12Q8WVT3 735 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 C3orf49Q96BT1 292 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 ISCA1Q9BUE6 129 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 HERC2P3Q9BVR0 1158 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 CDT1Q9H211 546 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 VPS33BQ9H267 617 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 PABPC3Q9H361 631 aaKnown RBP2.38□□□□□ -2.03
VPS13A-206ENST00000376646 PRDM8Q9NQV8 689 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 SLC4A4Q9Y6R1 1079 aa2.38□□□□□ -2.03
VPS13A-206ENST00000376646 IPO5O00410 1097 aaKnown RBP2.37□□□□□ -2.03
VPS13A-206ENST00000376646 HSPB6O14558 160 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 SYN3O14994 580 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 DHRS4L1P0CG22 281 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 GSTM2P28161 218 aa2.37□□□□□ -2.03
VPS13A-206ENST00000376646 ERVFC1-1P60608 527 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms