RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ZNF252P-AS1Q0IIN9 211 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 SLC14A1Q13336 389 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 EFHC2Q5JST6 749 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 AGBL4Q5VU57 503 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 HGSNATQ68CP4 663 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3GQ6DHY5 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3CQ6IPX1 549 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 RETSATQ6NUM9 610 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 PPP1R2P3Q6NXS1 205 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 DPY19L3Q6ZPD9 716 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 TBC1D3Q8IZP1 549 aaPredicted RBP18.77■□□□□ 0.6
CLN3-202ENST00000355477 ARFGAP1Q8N6T3 406 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 SLC6A18Q96N87 628 aa18.77■□□□□ 0.6
CLN3-202ENST00000355477 NOL6Q9H6R4 1146 aaKnown RBP18.77■□□□□ 0.6
CLN3-202ENST00000355477 FNDC3AQ9Y2H6 1198 aaKnown RBP18.77■□□□□ 0.6
CLN3-202ENST00000355477 FCF1Q9Y324 198 aaKnown RBP18.77■□□□□ 0.6
CLN3-202ENST00000355477 FARP1Q9Y4F1 1045 aaPredicted RBP18.77■□□□□ 0.6
CLN3-202ENST00000355477 SPAARA0A1B0GVQ0 90 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 A0A1W2PQJ5 194 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 TMEM191CA6NGB0 347 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 PLRG1O43660 514 aaKnown RBP18.76■□□□□ 0.59
CLN3-202ENST00000355477 GRIA4P48058 902 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 TAS2R38P59533 333 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 TEAD4Q15561 434 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 ARSIQ5FYB1 569 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 IL27RAQ6UWB1 636 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 TMIEQ8NEW7 156 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 CPLX3Q8WVH0 158 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 ARRDC3Q96B67 414 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 CEP44Q9C0F1 390 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 MAGEH1Q9H213 219 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 SLC32A1Q9H598 525 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 GPATCH2LQ9NWQ4 482 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 IFNKQ9P0W0 207 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 ARHGAP20Q9P2F6 1191 aa18.76■□□□□ 0.59
CLN3-202ENST00000355477 KPNA3O00505 521 aaPredicted RBP18.75■□□□□ 0.59
CLN3-202ENST00000355477 SLC7A4O43246 635 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 LATO43561 262 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 CREB3O43889 395 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 CER1O95813 267 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 WNT1P04628 370 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 PSMA2P25787 234 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 EPHB2P29323 1055 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 DNA2P51530 1060 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 AIF1P55008 147 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 RACK1P63244 317 aaKnown RBP18.75■□□□□ 0.59
CLN3-202ENST00000355477 POLD3Q15054 466 aaPredicted RBP18.75■□□□□ 0.59
CLN3-202ENST00000355477 SKOR2Q2VWA4 1001 aaPredicted RBP18.75■□□□□ 0.59
CLN3-202ENST00000355477 PIP5KL1Q5T9C9 394 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 LEKR1Q6ZMV7 388 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 RTL3Q8N8U3 475 aaKnown RBP18.75■□□□□ 0.59
CLN3-202ENST00000355477 GRIN3AQ8TCU5 1115 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 CCDC114Q96M63 670 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 KLC2Q9H0B6 622 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 ISCUQ9H1K1 167 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 KDM4CQ9H3R0 1056 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 CNOT8Q9UFF9 292 aaKnown RBP18.75■□□□□ 0.59
CLN3-202ENST00000355477 IL36AQ9UHA7 158 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 CAPN11Q9UMQ6 739 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 WASF2Q9Y6W5 498 aa18.75■□□□□ 0.59
CLN3-202ENST00000355477 RAMP2O60895 175 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 LEFTY1O75610 366 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 PRNPP04156 253 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 MAT2AP31153 395 aaKnown RBP18.74■□□□□ 0.59
CLN3-202ENST00000355477 ETFBP38117 255 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 CTSKP43235 329 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 CA9Q16790 459 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 CARD16Q5EG05 197 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 PCDH20Q8N6Y1 951 aaKnown RBP18.74■□□□□ 0.59
CLN3-202ENST00000355477 SYN2Q92777 582 aaPredicted RBP18.74■□□□□ 0.59
CLN3-202ENST00000355477 ZNF653Q96CK0 615 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 CNTNAP3BQ96NU0 1288 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 PEBP4Q96S96 227 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 CNTNAP3Q9BZ76 1288 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 TM7SF3Q9NS93 570 aa18.74■□□□□ 0.59
CLN3-202ENST00000355477 A0A1W2PR77 199 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 VILLO15195 856 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 KDELR3O43731 214 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 TOP3BO95985 862 aaKnown RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 GYPCP04921 128 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 ZNF883P0CG24 379 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 RECQLP46063 649 aaPredicted RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 SIM1P81133 766 aaPredicted RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 ZBED6P86452 979 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 TDRD12Q587J7 1177 aaKnown RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 CYP4V2Q6ZWL3 525 aaPredicted RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 ADAT2Q7Z6V5 191 aaKnown RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 NAXDQ8IW45 347 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 SERAC1Q96JX3 654 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 EPAS1Q99814 870 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN3-202ENST00000355477 TM6SF2Q9BZW4 377 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 XPO4Q9C0E2 1151 aaKnown RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 AASDHPPTQ9NRN7 309 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 MYO1AQ9UBC5 1043 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 PCSK1NQ9UHG2 260 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 ANGPTL2Q9UKU9 493 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 HPCAL4Q9UM19 191 aa18.73■□□□□ 0.59
CLN3-202ENST00000355477 TDRD6O60522 2096 aaKnown RBP18.73■□□□□ 0.59
CLN3-202ENST00000355477 CXorf51AA0A1B0GTR3 108 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms