RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 APOC2P02655 101 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 MX2P20592 715 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 NR2C2P49116 596 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 CLCN6P51797 869 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 DGKEP52429 567 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 KLF1Q13351 362 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-203ENST00000354098 CAMK2GQ13555 558 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-203ENST00000354098 INO80DQ53TQ3 878 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-203ENST00000354098 FAM182AQ5T1J6 154 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 CCDC181Q5TID7 509 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 LRRC49Q8IUZ0 686 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 FAM118BQ9BPY3 351 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 SLC6A17Q9H1V8 727 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 EDDM13A0A1B0GTR0 161 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 TCRBV21S2A2A0A5A6 115 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 K7ESF4 209 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 LAMTOR5O43504 91 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 SLC10A7Q0GE19 358 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 STARD3Q14849 445 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 HDAC11Q96DB2 347 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 TSGA13Q96PP4 275 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 CCNCP24863 283 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 PXNP49023 591 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 COPAP53621 1224 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 OTUD4Q01804 1114 aaKnown RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 PPIDQ08752 370 aaKnown RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 PDK1Q15118 436 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 ADAT2Q7Z6V5 191 aaKnown RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 ZC3H18Q86VM9 953 aaKnown RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 SLC13A5Q86YT5 568 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 TSTD1Q8NFU3 115 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 OR2A12Q8NGT7 310 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 ACTL9Q8TC94 416 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 TM6SF2Q9BZW4 377 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 CEP44Q9C0F1 390 aa22.55■■□□□ 1.2
SHMT1-203ENST00000354098 MKRN2Q9H000 416 aaKnown RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 PRMT8Q9NR22 394 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-203ENST00000354098 TARSL2A2RTX5 802 aaKnown RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 CEP104O60308 925 aa22.54■■□□□ 1.2
SHMT1-203ENST00000354098 PAPSS2O95340 614 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 AP1B1Q10567 949 aa22.54■■□□□ 1.2
SHMT1-203ENST00000354098 LBRQ14739 615 aaKnown RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 STK40Q8N2I9 435 aa22.54■■□□□ 1.2
SHMT1-203ENST00000354098 TSEN2Q8NCE0 465 aaKnown RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 HMGB4Q8WW32 186 aa22.54■■□□□ 1.2
SHMT1-203ENST00000354098 CASKIN2Q8WXE0 1202 aa22.54■■□□□ 1.2
SHMT1-203ENST00000354098 ISG20Q96AZ6 181 aaKnown RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 ZNF419Q96HQ0 510 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 FAM129BQ96TA1 746 aa22.54■■□□□ 1.2
SHMT1-203ENST00000354098 POLMQ9NP87 494 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 R3HDM2Q9Y2K5 976 aaKnown RBP22.54■■□□□ 1.2
SHMT1-203ENST00000354098 MATN3O15232 486 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 GABRG2P18507 467 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 DMWDQ09019 674 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 NOMO1Q15155 1222 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 ATXN7L2Q5T6C5 722 aaPredicted RBP22.53■■□□□ 1.2
SHMT1-203ENST00000354098 TMCO4Q5TGY1 634 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 ANO7Q6IWH7 933 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 BZW1Q7L1Q6 419 aaKnown RBP22.53■■□□□ 1.2
SHMT1-203ENST00000354098 CCDC13Q8IYE1 715 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 PCDH20Q8N6Y1 951 aaKnown RBP22.53■■□□□ 1.2
SHMT1-203ENST00000354098 CHST14Q8NCH0 376 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 EXOC2Q96KP1 924 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 ZNF599Q96NL3 588 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 OSBPL9Q96SU4 736 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 C10orf88Q9H8K7 445 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 LHX3Q9UBR4 397 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 SNX12Q9UMY4 172 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 CACNA1IQ9P0X4 2223 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 CKAP5Q14008 2032 aa22.53■■□□□ 1.2
SHMT1-203ENST00000354098 KCNK1O00180 336 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 PPP1R12AO14974 1030 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 MUSKO15146 869 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 RHOAP61586 193 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 CSTF1Q05048 431 aaKnown RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 RFTN1Q14699 578 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 CARD16Q5EG05 197 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 TIGD7Q6NT04 549 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 DPY19L3Q6ZPD9 716 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 METTL3Q86U44 580 aaKnown RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 CACUL1Q86Y37 369 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 MDGA1Q8NFP4 955 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 OR6K2Q8NGY2 324 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 OR2T3Q8NH03 318 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 COG1Q8WTW3 980 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 MS4A14Q96JA4 679 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 FGGP02679 453 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 TDGF1P13385 188 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 NDUFV2P19404 249 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 RGRP47804 291 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 PRKD1Q15139 912 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 MARC1Q5VT66 337 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 TMPRSS6Q8IU80 811 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 PGBD5Q8N414 524 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 CAMKK1Q8N5S9 505 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 TFB1MQ8WVM0 346 aaKnown RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 MAML1Q92585 1016 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 MRGPRX1Q96LB2 322 aa22.52■■□□□ 1.2
SHMT1-203ENST00000354098 NAPGQ99747 312 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-203ENST00000354098 CINPQ9BW66 212 aaPredicted RBP22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms