RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CCDC157Q569K6 752 aa8.8□□□□□ -1
RTN3-202ENST00000339997 TDRD10Q5VZ19 366 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 EGFLAMQ63HQ2 1017 aa8.8□□□□□ -1
RTN3-202ENST00000339997 RALGPS2Q86X27 583 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 ELMOD1Q8N336 334 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NKX2-3Q8TAU0 364 aa8.8□□□□□ -1
RTN3-202ENST00000339997 COPS5Q92905 334 aa8.8□□□□□ -1
RTN3-202ENST00000339997 TADA1Q96BN2 335 aa8.8□□□□□ -1
RTN3-202ENST00000339997 CERS2Q96G23 380 aa8.8□□□□□ -1
RTN3-202ENST00000339997 C9orf16Q9BUW7 83 aa8.8□□□□□ -1
RTN3-202ENST00000339997 SPATA16Q9BXB7 569 aa8.8□□□□□ -1
RTN3-202ENST00000339997 LRRC19Q9H756 370 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ANAPC2Q9UJX6 822 aa8.8□□□□□ -1
RTN3-202ENST00000339997 BARX2Q9UMQ3 279 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 CLEC4AQ9UMR7 237 aa8.8□□□□□ -1
RTN3-202ENST00000339997 SH3BP1Q9Y3L3 701 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ASCC3Q8N3C0 2202 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 DIP2BQ9P265 1576 aa8.8□□□□□ -1
RTN3-202ENST00000339997 RECQL5O94762 991 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 NOL4O94818 638 aa8.8□□□□□ -1
RTN3-202ENST00000339997 VCLP18206 1134 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ABATP80404 500 aa8.8□□□□□ -1
RTN3-202ENST00000339997 HSPA14Q0VDF9 509 aa8.8□□□□□ -1
RTN3-202ENST00000339997 BNIP1Q12981 228 aa8.8□□□□□ -1
RTN3-202ENST00000339997 FRG1Q14331 258 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 DGUOKQ16854 277 aa8.8□□□□□ -1
RTN3-202ENST00000339997 LIN52Q52LA3 116 aa8.8□□□□□ -1
RTN3-202ENST00000339997 RNASE12Q5GAN4 147 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 GRTP1Q5TC63 336 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ANKRD22Q5VYY1 191 aa8.8□□□□□ -1
RTN3-202ENST00000339997 KCNV1Q6PIU1 500 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NEK10Q6ZWH5 1172 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NET1Q7Z628 596 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 C8orf59Q8N0T1 100 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 CAMKK1Q8N5S9 505 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ALLCQ8N6M5 410 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ULBP1Q9BZM6 244 aa8.8□□□□□ -1
RTN3-202ENST00000339997 CIPCQ9C0C6 399 aa8.8□□□□□ -1
RTN3-202ENST00000339997 MMADHCQ9H3L0 296 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 TRMT13Q9NUP7 481 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 KLHL20Q9Y2M5 609 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ARID1BQ8NFD5 2236 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 SIPA1L3O60292 1781 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 TRDMT1O14717 391 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 PSIP1O75475 530 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 MTRF1O75570 445 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 CD48P09326 243 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NFKB1P19838 968 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NUP62P37198 522 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 ATN1P54259 1190 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 RHOAP61586 193 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ST8SIA6P61647 398 aa8.8□□□□□ -1
RTN3-202ENST00000339997 KLF1Q13351 362 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 TRIM71Q2Q1W2 868 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 FAM45BPQ6NSW5 357 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NUDT18Q6ZVK8 323 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ANKS3Q6ZW76 656 aa8.8□□□□□ -1
RTN3-202ENST00000339997 SPPL2CQ8IUH8 684 aa8.8□□□□□ -1
RTN3-202ENST00000339997 OSCP1Q8WVF1 389 aa8.8□□□□□ -1
RTN3-202ENST00000339997 RSPH1Q8WYR4 309 aa8.8□□□□□ -1
RTN3-202ENST00000339997 AZIN2Q96A70 460 aa8.8□□□□□ -1
RTN3-202ENST00000339997 VPS33AQ96AX1 596 aa8.8□□□□□ -1
RTN3-202ENST00000339997 OLFM1Q99784 485 aa8.8□□□□□ -1
RTN3-202ENST00000339997 WDR18Q9BV38 432 aa8.8□□□□□ -1
RTN3-202ENST00000339997 MIEF1Q9NQG6 463 aa8.8□□□□□ -1
RTN3-202ENST00000339997 PMF1-BGLAPU3KQ54 211 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ALKQ9UM73 1620 aa8.8□□□□□ -1
RTN3-202ENST00000339997 RGSL1A5PLK6 1076 aa8.79□□□□□ -1
RTN3-202ENST00000339997 F5H5T6 163 aa8.79□□□□□ -1
RTN3-202ENST00000339997 LSM8O95777 96 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 NFICP08651 508 aa8.79□□□□□ -1
RTN3-202ENST00000339997 FDX1P10109 184 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CNTFP26441 200 aa8.79□□□□□ -1
RTN3-202ENST00000339997 TALDO1P37837 337 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CXCR3P49682 368 aa8.79□□□□□ -1
RTN3-202ENST00000339997 DDR1Q08345 913 aa8.79□□□□□ -1
RTN3-202ENST00000339997 BST2Q10589 180 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 TMEM63BQ5T3F8 832 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CERCAMQ5T4B2 595 aa8.79□□□□□ -1
RTN3-202ENST00000339997 SDHAF4Q5VUM1 108 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ZFP1Q6P2D0 407 aa8.79□□□□□ -1
RTN3-202ENST00000339997 C4orf22Q6V702 233 aa8.79□□□□□ -1
RTN3-202ENST00000339997 C16orf59Q7L2K0 433 aa8.79□□□□□ -1
RTN3-202ENST00000339997 PAGE2Q7Z2X7 111 aa8.79□□□□□ -1
RTN3-202ENST00000339997 FAM71AQ8IYT1 594 aa8.79□□□□□ -1
RTN3-202ENST00000339997 PQLC1Q8N2U9 271 aa8.79□□□□□ -1
RTN3-202ENST00000339997 DNAJB3Q8WWF6 145 aa8.79□□□□□ -1
RTN3-202ENST00000339997 PPM1MQ96MI6 270 aa8.79□□□□□ -1
RTN3-202ENST00000339997 KREMEN1Q96MU8 473 aa8.79□□□□□ -1
RTN3-202ENST00000339997 EBF3Q9H4W6 596 aa8.79□□□□□ -1
RTN3-202ENST00000339997 MROH8Q9H579 483 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ACSS3Q9H6R3 686 aa8.79□□□□□ -1
RTN3-202ENST00000339997 RMND5AQ9H871 391 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ABCB9Q9NP78 766 aa8.79□□□□□ -1
RTN3-202ENST00000339997 RPRD1BQ9NQG5 326 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.79□□□□□ -1
RTN3-202ENST00000339997 KLHL3Q9UH77 587 aa8.79□□□□□ -1
RTN3-202ENST00000339997 TMX2Q9Y320 296 aa8.79□□□□□ -1
RTN3-202ENST00000339997 COMMD3-BMI1R4GMX3 469 aa8.79□□□□□ -1
RTN3-202ENST00000339997 H3BRB1 525 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms