RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 LRRC42Q9Y546 428 aa12.12□□□□□ -0.47
USP1-201ENST00000339950 SUPT3HB4E1H0 165 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 KATNA1O75449 491 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 TFEBP19484 476 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 PTPN3P26045 913 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ESRRGP62508 458 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 TSPY1Q01534 308 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ROR2Q01974 943 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 CAPRIN1Q14444 709 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 SNX17Q15036 470 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 LSM12Q3MHD2 195 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 ACBD5Q5T8D3 534 aaPredicted RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 CES4AQ5XG92 561 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 GRAMD4Q6IC98 578 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 C16orf87Q6PH81 154 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 NAPRTQ6XQN6 538 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 GPR142Q7Z601 462 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 MYO1HQ8N1T3 1032 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ZNF786Q8N393 782 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 SKA1Q96BD8 255 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 CCDC90BQ9GZT6 254 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 STX18Q9P2W9 335 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 MAST2Q6P0Q8 1798 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 TPP2P29144 1249 aaPredicted RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 CD52P31358 61 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 GABRB2P47870 512 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 SLC26A2P50443 739 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 CLDN10P78369 228 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 NAPEPLDQ6IQ20 393 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 MILR1Q7Z6M3 343 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 CHSY1Q86X52 802 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 GIPC2Q8TF65 315 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 TMEM209Q96SK2 561 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 SLC4A5Q9BY07 1137 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 FAM96AQ9H5X1 160 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 LIN28AQ9H9Z2 209 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 SPC25Q9HBM1 224 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 FBRSL1Q9HCM7 1045 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 BCLAF3A2AJT9 711 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 GGT5P36269 586 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ETV4P43268 484 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ZNF235Q14590 738 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 SLC25A52Q3SY17 297 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 KYAT3Q6YP21 454 aaKnown RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 EZH1Q92800 747 aaPredicted RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 MYLPFQ96A32 169 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 OLFM3Q96PB7 478 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 CIB1Q99828 191 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 CCT7Q99832 543 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 SEMA4BQ9NPR2 832 aaPredicted RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 KCTD3Q9Y597 815 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ARFGEF1Q9Y6D6 1849 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 PCNAP12004 261 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 HADHAP40939 763 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ALDH1A3P47895 512 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 PIK3CGP48736 1102 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 TAS2R39P59534 338 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 GALNT3Q14435 633 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 PFKFB4Q16877 469 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 DCAF4L1Q3SXM0 396 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 SLC39A12Q504Y0 691 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 FSTL5Q8N475 847 aaPredicted RBP12.11□□□□□ -0.47
USP1-201ENST00000339950 ARRDC4Q8NCT1 418 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 DNAJB14Q8TBM8 379 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 COLEC11Q9BWP8 271 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 VPS33BQ9H267 617 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ZNF212Q9UDV6 495 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 PGAP2Q9UHJ9 254 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 ST3GAL5Q9UNP4 418 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 TIMM22Q9Y584 194 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 PTGDR2Q9Y5Y4 395 aa12.11□□□□□ -0.47
USP1-201ENST00000339950 C17orf102A2RUQ5 167 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 SMAPO00193 183 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 ZBTB14O43829 449 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 CLPTM1O96005 669 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 JUNP05412 331 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 MMP3P08254 477 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 GRK2P25098 689 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 GRM5P41594 1212 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 THOP1P52888 689 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 FOLH1Q04609 750 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 TWF1Q12792 350 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 PCLAFQ15004 111 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 PDK3Q15120 406 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 ZIK1Q3SY52 487 aaPredicted RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 MTX3Q5HYI7 312 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 CNSTQ6PJW8 725 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 PLEKHH3Q7Z736 793 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 FAM35AQ86V20 835 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 NPWQ8N729 165 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 ATAD1Q8NBU5 361 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 ZNF398Q8TD17 642 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 CNDP1Q96KN2 507 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 C1orf50Q9BV19 199 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 FRMD8P1Q9BZ68 369 aaPredicted RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 EURLQ9NYK6 297 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 NCKIPSDQ9NZQ3 722 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 DDHD2O94830 711 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 RPL10P27635 214 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms