RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 SUDS3Q9H7L9 328 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-201ENST00000333371 WDR6Q9NNW5 1121 aaKnown RBP12.53□□□□□ -0.4
VPS33B-201ENST00000333371 CLIC5Q9NZA1 410 aa12.53□□□□□ -0.4
VPS33B-201ENST00000333371 RCOR3Q9P2K3 495 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-201ENST00000333371 DTNAQ9Y4J8 743 aa12.53□□□□□ -0.4
VPS33B-201ENST00000333371 C15orf38-AP3S2A0A0A6YYH1 394 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 MEIS3P2A8K0S8 358 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 MATN2O00339 956 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 USP17L7P0C7H9 530 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 NPR3P17342 541 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 TAF6P49848 677 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 CDC42EP1Q00587 391 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 MAP2K5Q13163 448 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 CTBP1Q13363 440 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 CEACAM7Q14002 265 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 KCTD11Q693B1 232 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 UGT2A3Q6UWM9 527 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 ARHGAP36Q6ZRI8 547 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 RPS27LQ71UM5 84 aaKnown RBP12.52□□□□□ -0.4
VPS33B-201ENST00000333371 PTAR1Q7Z6K3 402 aaPredicted RBP12.52□□□□□ -0.4
VPS33B-201ENST00000333371 ARPINQ7Z6K5 226 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 TLK2Q86UE8 772 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 LILRA2Q8N149 483 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 ICA1LQ8NDH6 482 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 ZFAND2BQ8WV99 257 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 DCUN1D1Q96GG9 259 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 FERMT1Q9BQL6 677 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 FTHL17Q9BXU8 183 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 COPS7BQ9H9Q2 264 aaPredicted RBP12.52□□□□□ -0.4
VPS33B-201ENST00000333371 RUVBL2Q9Y230 463 aaKnown RBP12.52□□□□□ -0.4
VPS33B-201ENST00000333371 DERAQ9Y315 318 aa12.52□□□□□ -0.4
VPS33B-201ENST00000333371 MT-CYBP00156 380 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 NCAM1P13591 858 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 TFEBP19484 476 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 SCNN1AP37088 669 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 HUNKP57058 714 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 MPP1Q00013 466 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 USP10Q14694 798 aaKnown RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 BNIPLQ7Z465 357 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 PQLC1Q8N2U9 271 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 DNAJB3Q8WWF6 145 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 NMD3Q96D46 503 aaKnown RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 NPAS2Q99743 824 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 C1QTNF1Q9BXJ1 281 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 FAM96AQ9H5X1 160 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 DDIT4Q9NX09 232 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 ADAM28Q9UKQ2 775 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 NEMP2A6NFY4 417 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 PTPN1P18031 435 aaKnown RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 PMLP29590 882 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 AFF1P51825 1210 aaKnown RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 FLOT2Q14254 428 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 MFSD10Q14728 455 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 TAF1CQ15572 869 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 OGFRL1Q5TC84 451 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 SEL1L3Q68CR1 1132 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 SDCCAG8Q86SQ7 713 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 CEP97Q8IW35 865 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 MFSD6LQ8IWD5 586 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 LSMEM2Q8N112 164 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 FSTL5Q8N475 847 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 GALNT4Q8N4A0 578 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 CCNYL1Q8N7R7 359 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 ZNF419Q96HQ0 510 aaPredicted RBP12.52□□□□□ -0.41
VPS33B-201ENST00000333371 CENPKQ9BS16 269 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 APPL1Q9UKG1 709 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 STAP1Q9ULZ2 295 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 TBC1D30Q9Y2I9 924 aa12.52□□□□□ -0.41
VPS33B-201ENST00000333371 HDAC3O15379 428 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 F2P00734 622 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 AHSGP02765 367 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 MPOP05164 745 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 MYL3P08590 195 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 SLC35E2BP0CK96 405 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 RPL14P50914 215 aaKnown RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 PPIDQ08752 370 aaKnown RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 POU6F1Q14863 301 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 CENPLQ8N0S6 344 aaPredicted RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 KYQ8NBH2 561 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 BHLHE22Q8NFJ8 381 aaPredicted RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 TMA16Q96EY4 203 aaKnown RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 HNRNPABQ99729 332 aaKnown RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 GBA3Q9H227 469 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 XPR1Q9UBH6 696 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 STK39Q9UEW8 545 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 RGSL1A5PLK6 1076 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 TMEM114B3SHH9 223 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 CASQ2O14958 399 aaPredicted RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 SMIM18P0DKX4 95 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 CALRP27797 417 aaKnown RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 NUMBP49757 651 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 CHN2P52757 468 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 ZNF423Q2M1K9 1284 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 ZC3HC1Q86WB0 502 aaKnown RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 CNTD1Q8N815 330 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 ZSCAN18Q8TBC5 510 aaPredicted RBP12.51□□□□□ -0.41
VPS33B-201ENST00000333371 NXNL1Q96CM4 212 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 TNIP3Q96KP6 325 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 CNBD2Q96M20 576 aa12.51□□□□□ -0.41
VPS33B-201ENST00000333371 SLC2A13Q96QE2 648 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms