RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 AGPAT1Q99943 283 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 MYOCQ99972 504 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 HSD3B7Q9H2F3 369 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 PREBQ9HCU5 417 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 TOR4AQ9NXH8 423 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 ARHGAP20Q9P2F6 1191 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 FTSJ1Q9UET6 329 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 IL36AQ9UHA7 158 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 DNAI1Q9UI46 699 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 DMTF1Q9Y222 760 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 CA5BQ9Y2D0 317 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 FCF1Q9Y324 198 aaKnown RBP19.94■□□□□ 0.78
LIME1-201ENST00000309546 ACTL7AQ9Y615 435 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 PLXNB3Q9ULL4 1909 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 AKAP13Q12802 2813 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 FAM72CH0Y354 149 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 RNF103O00237 685 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 TNFSF14O43557 240 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 ZMPSTE24O75844 475 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 RFC1P35251 1148 aaPredicted RBP19.93■□□□□ 0.78
LIME1-201ENST00000309546 ACVRL1P37023 503 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 ARRB1P49407 418 aaPredicted RBP19.93■□□□□ 0.78
LIME1-201ENST00000309546 HDAC4P56524 1084 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 GSCP56915 257 aaPredicted RBP19.93■□□□□ 0.78
LIME1-201ENST00000309546 NXPH1P58417 271 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 CCDC15Q0P6D6 951 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 STAT4Q14765 748 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 SHBQ15464 509 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 ARSIQ5FYB1 569 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 FAM72AQ5TYM5 149 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 MANEALQ5VSG8 457 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 FAM72DQ6L9T8 149 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 DNAJC24Q6P3W2 148 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 APTXQ7Z2E3 356 aaKnown RBP19.93■□□□□ 0.78
LIME1-201ENST00000309546 FAM72BQ86X60 149 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 MFSD2AQ8NA29 543 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 C3orf20Q8ND61 904 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 TMIEQ8NEW7 156 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 TBC1D31Q96DN5 1066 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 MAGEB5Q9BZ81 275 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 NDFIP2Q9NV92 336 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 TMEM63CQ9P1W3 806 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 IGF2RP11717 2491 aa19.93■□□□□ 0.78
LIME1-201ENST00000309546 CHD5Q8TDI0 1954 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 SPEGQ15772 3267 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 A0A1W2PQU0 124 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 FAM221BA6H8Z2 402 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 LRRC10BA6NIK2 292 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 SLC31A1O15431 190 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 LEFTY1O75610 366 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 LRIG2O94898 1065 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 PRLRP16471 622 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 NUDT1P36639 197 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 ETFBP38117 255 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 MAPKAPK2P49137 400 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 NRG1Q02297 640 aaPredicted RBP19.92■□□□□ 0.78
LIME1-201ENST00000309546 ANO6Q4KMQ2 910 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 WDR59Q6PJI9 974 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 ERN2Q76MJ5 926 aaKnown RBP19.92■□□□□ 0.78
LIME1-201ENST00000309546 MON1BQ7L1V2 547 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 PCDH20Q8N6Y1 951 aaKnown RBP19.92■□□□□ 0.78
LIME1-201ENST00000309546 PPP1R16AQ96I34 528 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 MCEEQ96PE7 176 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 TM6SF2Q9BZW4 377 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 CEP44Q9C0F1 390 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 NAT10Q9H0A0 1025 aaKnown RBP19.92■□□□□ 0.78
LIME1-201ENST00000309546 OSBPL2Q9H1P3 480 aa19.92■□□□□ 0.78
LIME1-201ENST00000309546 COL5A1P20908 1838 aaPredicted RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 ANKRD62A6NC57 917 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 PRAMEF26H0Y7S4 382 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 YKT6O15498 198 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 CCP110O43303 1012 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 ZNF821O75541 412 aaPredicted RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 PCDH8O95206 1070 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 PLEKP08567 350 aaPredicted RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 FERP16591 822 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 RHOQP17081 205 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 EPHA8P29322 1005 aaPredicted RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 SLC20A2Q08357 652 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 CARD16Q5EG05 197 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 SCYL2Q6P3W7 929 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 NLRP14Q86W24 1093 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 SPATS2Q86XZ4 545 aaKnown RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 RYBPQ8N488 228 aaPredicted RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 CENPIQ92674 756 aaPredicted RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 ARHGEF2Q92974 986 aaKnown RBP19.91■□□□□ 0.78
LIME1-201ENST00000309546 FZD3Q9NPG1 666 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 TMEM248Q9NWD8 314 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 WASF2Q9Y6W5 498 aa19.91■□□□□ 0.78
LIME1-201ENST00000309546 ASPMQ8IZT6 3477 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 SIGLEC16A6NMB1 481 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 MAGEC1O60732 1142 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 CCDC172P0C7W6 258 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 CCNHP51946 323 aaPredicted RBP19.9■□□□□ 0.78
LIME1-201ENST00000309546 NEK3P51956 506 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 C1QBPQ07021 282 aaKnown RBP19.9■□□□□ 0.78
LIME1-201ENST00000309546 LEKR1Q6ZMV7 388 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 SLFN11Q7Z7L1 901 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 IQCHQ86VS3 1027 aa19.9■□□□□ 0.78
LIME1-201ENST00000309546 HORMAD1Q86X24 394 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms