RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PDE12Q6L8Q7 609 aaKnown RBP17.13■□□□□ 0.33
CPSF4-201ENST00000292476 CAND1Q86VP6 1230 aaKnown RBP17.13■□□□□ 0.33
CPSF4-201ENST00000292476 RAB3IL1Q8TBN0 382 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 AUTS2Q8WXX7 1259 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 AZIN2Q96A70 460 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 PLD4Q96BZ4 506 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 HDAC11Q96DB2 347 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 ANKRD27Q96NW4 1050 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 KLHL5Q96PQ7 755 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 VAT1Q99536 393 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 TSSK1BQ9BXA7 367 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 TLE6Q9H808 572 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 ALG13Q9NP73 1137 aaKnown RBP17.13■□□□□ 0.33
CPSF4-201ENST00000292476 SLC17A7Q9P2U7 560 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 ZFP69BQ9UJL9 534 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 GREB1Q4ZG55 1949 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 PRUNE2Q8WUY3 3088 aa17.13■□□□□ 0.33
CPSF4-201ENST00000292476 E9PAM4 449 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 TGM5O43548 720 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 OPHN1O60890 802 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 CNTFP26441 200 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 FDFT1P37268 417 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 SLC11A2P49281 568 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 SERPINB9P50453 376 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 GALNT2Q10471 571 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 AP1B1Q10567 949 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 DBN1Q16643 649 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 FAM91A1Q658Y4 838 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 KIF2BQ8N4N8 673 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 AGAP11Q8TF27 550 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 SERAC1Q96JX3 654 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 CCSER2Q9H7U1 834 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 TLR9Q9NR96 1032 aa17.12■□□□□ 0.33
CPSF4-201ENST00000292476 MTO1Q9Y2Z2 717 aaKnown RBP17.12■□□□□ 0.33
CPSF4-201ENST00000292476 ZNF638Q14966 1978 aaKnown RBP17.12■□□□□ 0.33
CPSF4-201ENST00000292476 REV3LO60673 3130 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 PLXNA4Q9HCM2 1894 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 A0A0A0MRY4 1105 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 GRM6O15303 877 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 KRT38O76015 456 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 TBX18O95935 607 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 MLNP12872 115 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 RHOQP17081 205 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 SARNPP82979 210 aaKnown RBP17.11■□□□□ 0.33
CPSF4-201ENST00000292476 PPIDQ08752 370 aaKnown RBP17.11■□□□□ 0.33
CPSF4-201ENST00000292476 SEMA5AQ13591 1074 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 LILRA6Q6PI73 481 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 TAB3Q8N5C8 712 aaPredicted RBP17.11■□□□□ 0.33
CPSF4-201ENST00000292476 MRPL43Q8N983 215 aaKnown RBP17.11■□□□□ 0.33
CPSF4-201ENST00000292476 GSDMBQ8TAX9 411 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 CFAP36Q96G28 342 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 SPATA13Q96N96 652 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 DDX50Q9BQ39 737 aaKnown RBP17.11■□□□□ 0.33
CPSF4-201ENST00000292476 ZYG11BQ9C0D3 744 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 NPHS2Q9NP85 383 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 DPP7Q9UHL4 492 aa17.11■□□□□ 0.33
CPSF4-201ENST00000292476 FAM159BA6NKW6 160 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 COPEO14579 308 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 GLUD1P00367 558 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 ATP5BP06576 529 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 T-ENOLP0DO92 83 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 GARSP41250 739 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 CCNG1P51959 295 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 MS4A13Q5J8X5 152 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 CLNKQ7Z7G1 428 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 EBNA1BP2Q99848 306 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 IQCGQ9H095 443 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 EIF2B3Q9NR50 452 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 TRHDEQ9UKU6 1024 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 ATG2AQ2TAZ0 1938 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 MYO7AQ13402 2215 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 IGLV3-10A0A075B6K4 115 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 TRIM49D1C9J1S8 452 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 MAP3K6O95382 1288 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 FGF19O95750 216 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 APRTP07741 180 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 PYGBP11216 843 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 PFKLP17858 780 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 POU3F3P20264 500 aaPredicted RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 PTPN4P29074 926 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 SERPINB4P48594 390 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 NRLP54845 237 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 NAB1Q13506 487 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 WASHC2DQ5SRD0 308 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 STEAP4Q687X5 459 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 TIGD7Q6NT04 549 aaPredicted RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 ELMSAN1Q6PJG2 1045 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 TIFABQ6ZNK6 161 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 RTL3Q8N8U3 475 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 KREMEN2Q8NCW0 462 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 SPPL3Q8TCT6 385 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 POF1BQ8WVV4 589 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 UTP4Q969X6 686 aaKnown RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 SLC7A6OSQ96CW6 309 aaPredicted RBP17.1■□□□□ 0.33
CPSF4-201ENST00000292476 P2RY11Q96G91 374 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 TSGA13Q96PP4 275 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 GCNAQ96QF7 691 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 LGMNQ99538 433 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 TRIM33Q9UPN9 1127 aa17.1■□□□□ 0.33
CPSF4-201ENST00000292476 STK38LQ9Y2H1 464 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms