RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MAGEA2P43356 314 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PITPNAQ00169 270 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FAM69CQ0P6D2 419 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PRKG2Q13237 762 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TAF5Q15542 800 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 BAIAP2L2Q6UXY1 529 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PAGE2Q7Z2X7 111 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RIOX2Q8IUF8 465 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ZZZ3Q8IYH5 903 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MCOLN2Q8IZK6 566 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CNDP2Q96KP4 475 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MRPL57Q9BQC6 102 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM47Q9BQJ4 181 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF717Q9BY31 904 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 KCNN2Q9H2S1 579 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PCDH12Q9NPG4 1184 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ARL8BQ9NVJ2 186 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TRPM5Q9NZQ8 1165 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FBXO40Q9UH90 709 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 A0A0J9YVX5 310 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GSG1L2A8MUP6 293 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 F8W031 263 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TEX46H3BTG2 121 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TSPAN1O60635 241 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CFL1P23528 166 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GPSM2P81274 684 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TCEAL1Q15170 157 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 HECTD3Q5T447 861 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RNF19BQ6ZMZ0 732 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GALNT12Q8IXK2 581 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FAM126BQ8IXS8 530 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NIM1KQ8IY84 436 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ELMOD2Q8IZ81 293 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ANKRD52Q8NB46 1076 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 EEF1AKMT1Q8WVE0 214 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF669Q96BR6 464 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SHCBP1LQ9BZQ2 653 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MAF1Q9H063 256 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FAM25EA8MYX2 175 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 UBXN8O00124 270 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TBX10O75333 385 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FBXO21O94952 628 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CRYZL1O95825 349 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SERPINF2P08697 491 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ITGA4P13612 1032 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ELK3P41970 407 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 KCNJ1P48048 391 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 UBE3AQ05086 875 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ACOX1Q15067 660 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM119Q4V9L6 283 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 LIPMQ5VYY2 423 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TMPRSS11AQ6ZMR5 421 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 BBS12Q6ZW61 710 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 IFNEQ86WN2 208 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ABRAQ8N0Z2 381 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DPP10Q8N608 796 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TEX47Q8TBZ9 253 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TSPEARQ8WU66 669 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PTCD2Q8WV60 388 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SLC44A1Q8WWI5 657 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MCEEQ96PE7 176 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 EIF2AK1Q9BQI3 630 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ETNK2Q9NVF9 386 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GMPPBQ9Y5P6 360 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NUAK1O60285 661 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 VPS26AO75436 327 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NCAM1P13591 858 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PRKACBP22694 351 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GTF2IP78347 998 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RELAQ04206 551 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DLGAP5Q15398 846 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DPP8Q6V1X1 898 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 POU5F2Q8N7G0 328 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ISOC1Q96CN7 298 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 KLF6Q99612 283 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RCOR3Q9P2K3 495 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 BCLAF3A2AJT9 711 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FUOMA2VDF0 154 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 C2orf74A8MZ97 194 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PLEKP08567 350 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 AMPD1P23109 780 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RABL3Q5HYI8 236 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CCSAPQ6IQ19 270 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DUS1LQ6P1R4 473 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF549Q6P9A3 640 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 AURKBQ96GD4 344 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MBOAT7Q96N66 472 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 EGFL8Q99944 293 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DHX35Q9H5Z1 703 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CASS4Q9NQ75 786 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM45AQ9NWC5 275 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RBAKQ9NYW8 714 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PDE10AQ9Y233 779 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 BPGMP07738 259 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MYCLP12524 364 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RFC4P35249 363 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SCNN1DP51172 638 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GTF2H3Q13889 308 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PRKG1Q13976 671 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GNA13Q14344 377 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms