RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FCGR2AP12318 317 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 PRKCHP24723 683 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 SERPINB3P29508 390 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 AVPR2P30518 371 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 ART1P52961 327 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 BTKQ06187 659 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 DSC1Q08554 894 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 C5orf22Q49AR2 442 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 SYTL3Q4VX76 610 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 LRRC24Q50LG9 513 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 C9orf57Q5W0N0 161 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 LIN54Q6MZP7 749 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 C8orf82Q6P1X6 216 aaPredicted RBP4.49□□□□□ -1.69
CD44-239ENST00000639002 SCN4BQ8IWT1 228 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 ARRDC3Q96B67 414 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 ELAC2Q9BQ52 826 aaKnown RBP4.49□□□□□ -1.69
CD44-239ENST00000639002 PABPC3Q9H361 631 aaKnown RBP4.49□□□□□ -1.69
CD44-239ENST00000639002 PLSCR4Q9NRQ2 329 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 PCDHGB1Q9Y5G3 927 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 FAM90A20PA6NIJ5 464 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 SRRM3A6NNA2 597 aaPredicted RBP4.48□□□□□ -1.69
CD44-239ENST00000639002 C17orf100A8MU93 164 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 BTBD18B2RXH4 712 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 ACTL6BO94805 426 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 TMCC1O94876 653 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 HLA-DQA2P01906 255 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 PCP4P48539 62 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 COMPP49747 757 aaPredicted RBP4.48□□□□□ -1.69
CD44-239ENST00000639002 OAZ1P54368 228 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 GAS1P54826 345 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 TBX4P57082 545 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 IZUMO4Q1ZYL8 232 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 ZACNQ401N2 412 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 C9orf50Q5SZB4 431 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 ATPAF1Q5TC12 328 aaPredicted RBP4.48□□□□□ -1.69
CD44-239ENST00000639002 HEPHL1Q6MZM0 1159 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 ZNF527Q8NB42 609 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 HDAC7Q8WUI4 952 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 KCNJ9Q92806 393 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 TRIM31Q9BZY9 425 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 WDR12Q9GZL7 423 aaKnown RBP4.48□□□□□ -1.69
CD44-239ENST00000639002 BRD8Q9H0E9 1235 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 HERC5Q9UII4 1024 aaKnown RBP4.48□□□□□ -1.69
CD44-239ENST00000639002 CDH22Q9UJ99 828 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 SLC25A13Q9UJS0 675 aa4.48□□□□□ -1.69
CD44-239ENST00000639002 VWA5AO00534 786 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 PRC1O43663 620 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 DDAH2O95865 285 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 PRSS2P07478 247 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 ITGA2BP08514 1039 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 FCGR1AP12314 374 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 CHN1P15882 459 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 SERPINF1P36955 418 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 CLCN5P51795 746 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 ERVFC1-1P60608 527 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 AP2B1P63010 937 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 BNC1Q01954 994 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 GRSF1Q12849 480 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-239ENST00000639002 ALKBH1Q13686 389 aaKnown RBP4.47□□□□□ -1.69
CD44-239ENST00000639002 MAP9Q49MG5 647 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 RASGRP2Q7LDG7 609 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 ZNF333Q96JL9 665 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 FRG2BQ96QU4 278 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-239ENST00000639002 IL25Q9H293 177 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 ELAC1Q9H777 363 aaKnown RBP4.47□□□□□ -1.69
CD44-239ENST00000639002 ARFGAP3Q9NP61 516 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 TXLNGQ9NUQ3 528 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 KLQ9UEF7 1012 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 C19orf53Q9UNZ5 99 aaPredicted RBP4.47□□□□□ -1.69
CD44-239ENST00000639002 OSGIN2Q9Y236 505 aa4.47□□□□□ -1.69
CD44-239ENST00000639002 SAC3D1A6NKF1 404 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 CYSRT1A8MQ03 144 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 SMTNL1A8MU46 457 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 SYT5O00445 386 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 DDNO94850 711 aaPredicted RBP4.46□□□□□ -1.7
CD44-239ENST00000639002 CLDN7O95471 211 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 GSTM2P28161 218 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 AMTP48728 403 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 SEC61A1P61619 476 aaKnown RBP4.46□□□□□ -1.7
CD44-239ENST00000639002 COASYQ13057 564 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 RAB11FIP2Q7L804 512 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 TEX45Q8NA69 505 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 SVIPQ8NHG7 77 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 STT3BQ8TCJ2 826 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 FAR1Q8WVX9 515 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 PIGSQ96S52 555 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 SEL1LQ9UBV2 794 aa4.46□□□□□ -1.7
CD44-239ENST00000639002 DDTLA6NHG4 134 aaPredicted RBP4.45□□□□□ -1.7
CD44-239ENST00000639002 MYZAPP0CAP1 466 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 ACP5P13686 325 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 ARSAP15289 507 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 SERPINA4P29622 427 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 NUDT6P53370 316 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 CDH12P55289 794 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 EEF1A2Q05639 463 aaKnown RBP4.45□□□□□ -1.7
CD44-239ENST00000639002 GXYLT1Q4G148 440 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 TBC1D9BQ66K14 1250 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 ATG9BQ674R7 924 aa4.45□□□□□ -1.7
CD44-239ENST00000639002 DGAT2L7PQ6IED9 249 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms