RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 C16orf89Q6UX73 402 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 BTBD9Q96Q07 612 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 C11orf84Q9BUA3 381 aaPredicted RBP16.04■□□□□ 0.16
NPHP4-211ENST00000622020 FTHL17Q9BXU8 183 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 OXSMQ9NWU1 459 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 GTSE1Q9NYZ3 720 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 C6orf203Q9P0P8 240 aaPredicted RBP16.04■□□□□ 0.16
NPHP4-211ENST00000622020 GMPR2Q9P2T1 348 aaKnown RBP16.04■□□□□ 0.16
NPHP4-211ENST00000622020 PARP14Q460N5 1801 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 PFDN1O60925 122 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 PIGGQ5H8A4 983 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 PITRM1Q5JRX3 1037 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 SPANXN3Q5MJ09 141 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 MOB2Q70IA6 237 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 CYS1Q717R9 158 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 TRIM74Q86UV6 250 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 TRIM73Q86UV7 250 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 MYO1HQ8N1T3 1032 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 KBTBD7Q8WVZ9 684 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 SREK1Q8WXA9 508 aaKnown RBP16.04■□□□□ 0.16
NPHP4-211ENST00000622020 CENPIQ92674 756 aaPredicted RBP16.04■□□□□ 0.16
NPHP4-211ENST00000622020 ATXN3LQ9H3M9 355 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 NXF3Q9H4D5 531 aaKnown RBP16.04■□□□□ 0.16
NPHP4-211ENST00000622020 Q9H521 79 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 RIMS3Q9UJD0 308 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 TLL2Q9Y6L7 1015 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 CITO14578 2027 aa16.04■□□□□ 0.16
NPHP4-211ENST00000622020 TSPAN8P19075 237 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 NFKB1P19838 968 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 MATKP42679 507 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 POU5F1BQ06416 359 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 KCTD2Q14681 263 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 POU6F1Q14863 301 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 OTOP3Q7RTS5 596 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 FSTL5Q8N475 847 aaPredicted RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 MARVELD2Q8N4S9 558 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 NPWQ8N729 165 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 ANKRD52Q8NB46 1076 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 PDCD6IPQ8WUM4 868 aaKnown RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 AFG1LQ8WV93 481 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 CAAP1Q9H8G2 361 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 ELP3Q9H9T3 547 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 CDHR5Q9HBB8 845 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 HSFX1Q9UBD0 423 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 XPR1Q9UBH6 696 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 JCHAINP01591 159 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 LGALS2P05162 132 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 SBK3P0C264 359 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 ME2P23368 584 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 EPHX2P34913 555 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 PPARGP37231 505 aaPredicted RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 RGS2P41220 211 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 MPP1Q00013 466 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 ZBTB17Q13105 803 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 DGKDQ16760 1214 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 B3GNT6Q6ZMB0 384 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 PSTKQ8IV42 348 aaKnown RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 SPATA22Q8NHS9 363 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 LENG1Q96BZ8 264 aaPredicted RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 TRPV6Q9H1D0 765 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 SNX25Q9H3E2 840 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 CCDC167Q9P0B6 97 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 CDYLQ9Y232 598 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 SNX13Q9Y5W8 968 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 COPG1Q9Y678 874 aaKnown RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 BRCA2P51587 3418 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 I6L893 689 aaPredicted RBP16.03■□□□□ 0.16
NPHP4-211ENST00000622020 FAM58BPP0C7Q3 252 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 BCAT1P54687 386 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 XIAPP98170 497 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 TMED1Q13445 227 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 PTK2BQ14289 1009 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 SH2D4BQ5SQS7 431 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 LRTOMTQ8WZ04 291 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 NXNL1Q96CM4 212 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 TSNARE1Q96NA8 513 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 SLC39A3Q9BRY0 314 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 RAP2CQ9Y3L5 183 aa16.03■□□□□ 0.16
NPHP4-211ENST00000622020 VAPBO95292 243 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 ZBTB7AO95365 584 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 NME5P56597 212 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 PRAMEP78395 509 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 PABPC1LQ4VXU2 614 aaKnown RBP16.02■□□□□ 0.16
NPHP4-211ENST00000622020 DALRD3Q5D0E6 543 aaKnown RBP16.02■□□□□ 0.16
NPHP4-211ENST00000622020 EXOC8Q8IYI6 725 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 FAM110BQ8TC76 370 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 SNRNP27Q8WVK2 155 aaKnown RBP16.02■□□□□ 0.16
NPHP4-211ENST00000622020 PPWD1Q96BP3 646 aaKnown RBP16.02■□□□□ 0.16
NPHP4-211ENST00000622020 NAT9Q9BTE0 207 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 CCDC28BQ9BUN5 200 aa16.02■□□□□ 0.16
NPHP4-211ENST00000622020 MLPHQ9BV36 600 aaPredicted RBP16.02■□□□□ 0.16
NPHP4-211ENST00000622020 PSME4Q14997 1843 aa16.02■□□□□ 0.15
NPHP4-211ENST00000622020 ATP6AP2A0A1C7CYW4 349 aa16.02■□□□□ 0.15
NPHP4-211ENST00000622020 MAGEB3O15480 346 aa16.02■□□□□ 0.15
NPHP4-211ENST00000622020 DENRO43583 198 aaKnown RBP16.02■□□□□ 0.15
NPHP4-211ENST00000622020 USP2O75604 605 aaPredicted RBP16.02■□□□□ 0.15
NPHP4-211ENST00000622020 ATP6AP2O75787 350 aa16.02■□□□□ 0.15
NPHP4-211ENST00000622020 FAM200BP0CF97 657 aa16.02■□□□□ 0.15
NPHP4-211ENST00000622020 CD68P34810 354 aaPredicted RBP16.02■□□□□ 0.15
NPHP4-211ENST00000622020 GALK1P51570 392 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms